View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12901_high_3 (Length: 240)
Name: NF12901_high_3
Description: NF12901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12901_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 50273462 - 50273253
Alignment:
| Q |
16 |
aaaatcctgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50273462 |
aaaatcctgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaat |
50273363 |
T |
|
| Q |
116 |
cctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50273362 |
cctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctc |
50273263 |
T |
|
| Q |
216 |
ttgaacattt |
225 |
Q |
| |
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|||||||||| |
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| T |
50273262 |
ttgaacattt |
50273253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 1499274 - 1499477
Alignment:
| Q |
23 |
tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga |
122 |
Q |
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||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || | |
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| T |
1499274 |
tgccaatcagggggccttccacttccattagccaaagcaatggccatgatagcagcagcttccataacccatgataaaggattccacataaaacccaaaa |
1499373 |
T |
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| Q |
123 |
acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca |
222 |
Q |
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|||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || | |||| ||||||||| |
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| T |
1499374 |
acttcaaaaacttgctctcttttttctcttccaatttgtttggtccaaagacttgaagcctgttggctccttcttctgatgtcagaccttgtcttgaaca |
1499473 |
T |
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| Q |
223 |
tttt |
226 |
Q |
| |
|
|||| |
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|
| T |
1499474 |
tttt |
1499477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 1459469 - 1459266
Alignment:
| Q |
23 |
tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga |
122 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| | |
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| T |
1459469 |
tgccaatcaggaggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgacaaagggttccacataaaacctaaaa |
1459370 |
T |
|
| Q |
123 |
acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca |
222 |
Q |
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|
|||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||| |||||||||| ||||| || | |||| ||||||||| |
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| T |
1459369 |
acttcaaaaacttgttctcacttttctcttccagtttgtttggtccaaagacttgaagcctgctggctccttcctctgatgtcagaccttgtcttgaaca |
1459270 |
T |
|
| Q |
223 |
tttt |
226 |
Q |
| |
|
|||| |
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|
| T |
1459269 |
tttt |
1459266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 26787339 - 26787137
Alignment:
| Q |
23 |
tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga |
122 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || || | |
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| T |
26787339 |
tgccaatcagggggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgataaagggttccacataaaacccaaaa |
26787240 |
T |
|
| Q |
123 |
acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca |
222 |
Q |
| |
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| |||||||||||| | || |||||||||| | |||||| | ||||| |||| |||||| | |||||||| || || || |||||| ||| ||||| |
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| T |
26787239 |
atttcaaaaacttgttctcagttttctcttcgagtttgttatgtccaaatacttcaagcctactcgctccttcctccgatgtcaaaccttgtctcgaaca |
26787140 |
T |
|
| Q |
223 |
ttt |
225 |
Q |
| |
|
||| |
|
|
| T |
26787139 |
ttt |
26787137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 975615 - 975688
Alignment:
| Q |
53 |
gccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaactt |
126 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| ||||| |
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| T |
975615 |
gccatagcaatggccatgatagcagcagcttccataacccatgacaaaggattccacataaaccctaaaaactt |
975688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 3151680 - 3151585
Alignment:
| Q |
47 |
ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc |
142 |
Q |
| |
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||||| ||||||||||| ||||| || || ||||||||||| |||||||| | ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
3151680 |
ccattggccaaagcaatagccatgattgctgcagcttccatcacccatgaaagaggattccacataaatcccaaaaacttcaaaaacttgctttcc |
3151585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 48439770 - 48439894
Alignment:
| Q |
47 |
ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttt |
146 |
Q |
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|
||||| ||||| |||||||||||| |||||| | |||||||||||||||| |||||||||||| || || ||||| || | ||||||||||| ||| |
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| T |
48439770 |
ccatttgccaatccaatggccataagggcagcaacctccataacccatgatagtggattccacatgaaacccaagaatttaagtaacttgctttcagttt |
48439869 |
T |
|
| Q |
147 |
tctcttccaatttgtttggaccaaa |
171 |
Q |
| |
|
|||| || || ||||| |||||||| |
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| T |
48439870 |
tctcctctaacttgttaggaccaaa |
48439894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 44529715 - 44529636
Alignment:
| Q |
59 |
gcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgct |
138 |
Q |
| |
|
||||| ||||| |||||||| || ||||||||||| || | ||||||||||||||||| | || |||||||||||||| |
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| T |
44529715 |
gcaatagccattatagcagctgcctccataacccaagaaagaggattccacataaatcccagaaatttcaaaaacttgct |
44529636 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 45200171 - 45200266
Alignment:
| Q |
47 |
ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc |
142 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| | |||||||||||||| || ||||| |||| || ||||||||| |
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|
| T |
45200171 |
ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgctttcc |
45200266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 15866347 - 15866291
Alignment:
| Q |
58 |
agcaatggccataatagcagcagcttccataacccatgataatggattccacataaa |
114 |
Q |
| |
|
|||||| ||||| | ||| ||||||||||| |||||||||||||||||||||||||| |
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|
| T |
15866347 |
agcaattgccattaaagctgcagcttccatcacccatgataatggattccacataaa |
15866291 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 21983202 - 21983269
Alignment:
| Q |
47 |
ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaa |
114 |
Q |
| |
|
||||| ||||| |||||||||| || ||||| || ||||| |||||||||||||||||||||||||| |
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| T |
21983202 |
ccattggccaatacaatggccatgattgcagctgcctccatgacccatgataatggattccacataaa |
21983269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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