View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12901_low_1 (Length: 632)
Name: NF12901_low_1
Description: NF12901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12901_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 412
Target Start/End: Original strand, 49254555 - 49254965
Alignment:
| Q |
17 |
ctcttcattccgtgttcggagcaaactattacattnnnnnnngttcgttcgagcatcacatgtgaactgaacattgtttattacactttcaataataatc |
116 |
Q |
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| T |
49254555 |
ctcttcattccgtgttcggagcaaactattacattaaaaaaagttcgttcgagcatcacatgtgaactgaacattgtttattccaatttcaataataatc |
49254654 |
T |
|
| Q |
117 |
tcaacttccaccaacgtattcaaatcccaatattaatgta-------------ttcaattttctgggctagaaaatatggataaaggtttgttagagaaa |
203 |
Q |
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| T |
49254655 |
tcaacttccaccaacgtattcaaatcc-aatattaatgtaactttgtcacatattcaattttctgggctagaaaatatggaaaaaggtttgttagagaaa |
49254753 |
T |
|
| Q |
204 |
gacacagagggtg---gttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactt |
300 |
Q |
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|||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49254754 |
gacagagagggtgctggttcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactt |
49254853 |
T |
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| Q |
301 |
tgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgt |
400 |
Q |
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| T |
49254854 |
tgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttctctttctagcacagctattgctatctctctctgtgttgt |
49254953 |
T |
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| Q |
401 |
ctctggcttcag |
412 |
Q |
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| T |
49254954 |
ctctggcttcag |
49254965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 449 - 617
Target Start/End: Original strand, 49255932 - 49256100
Alignment:
| Q |
449 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccacatggta |
548 |
Q |
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| T |
49255932 |
atcatttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccatatggta |
49256031 |
T |
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| Q |
549 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggtt |
617 |
Q |
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| T |
49256032 |
taactttccctagtgtttagttttacgcatagatgactttgcgtgtatgaaagttgtattgtaatggtt |
49256100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 170 - 412
Target Start/End: Original strand, 49266985 - 49267227
Alignment:
| Q |
170 |
gctagaaaatatggataaaggtttgttagagaaagacacagagggtggttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgt |
269 |
Q |
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||||||||||||||| || ||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49266985 |
gctagaaaatatggaaaagggtttgttagagaaagacagagaaggtgattcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgt |
49267084 |
T |
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| Q |
270 |
tttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttctctttcta |
369 |
Q |
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| T |
49267085 |
tttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattatttcaatgataatggttggtcgtttgggtaaacttgctctttcta |
49267184 |
T |
|
| Q |
370 |
gcacagctattgctatctctctttgtgctgtctctggcttcag |
412 |
Q |
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| T |
49267185 |
gcacagctattgctatctctctctgtggtgtctctggcttcag |
49267227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 262 - 442
Target Start/End: Complemental strand, 49274761 - 49274577
Alignment:
| Q |
262 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgtgtaaactttc |
361 |
Q |
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||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatggttggtcatttgggtaaactttc |
49274662 |
T |
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| Q |
362 |
tctttctagcacagctat----tgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
442 |
Q |
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| T |
49274661 |
tctttctagcacagctattgcttgctatctctctttgtgctgtctctggcttcagccgttcagcgttcttgcaagtcttcttttg |
49274577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 49271447 - 49271633
Alignment:
| Q |
226 |
gcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattat |
325 |
Q |
| |
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||||| ||||| |||| ||| |||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49271447 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
49271546 |
T |
|
| Q |
326 |
ttcaatgatgatggttggtcatttgtgtaaactttctctttctagcacagctattgctatctctctttgtgctgtctctggcttcag |
412 |
Q |
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| T |
49271547 |
ttcaatgatgatggttggtcatttgggtaaacttgctctttctaccacagctattgctatctctctctatggtgtctctggcttcag |
49271633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 453 - 551
Target Start/End: Original strand, 49268906 - 49269004
Alignment:
| Q |
453 |
tttcagctttgagtggtggtcatttgagctcctagtctttctttctggtcttcttccaaatccacagcttgaaacttctgttttatccacatggtataa |
551 |
Q |
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||||||| ||||||||||||||||||| |||||| || |||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
49268906 |
tttcagccttgagtggtggtcatttgaactcctaatccttctttctggtcttctaccaaatccacagcttgaaacttcagtcttatccatatggtataa |
49269004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 486
Target Start/End: Original strand, 49273704 - 49273738
Alignment:
| Q |
452 |
atttcagctttgagtggtggtcatttgagctccta |
486 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
49273704 |
atttcagctttgagtggtggtcatttgagctccta |
49273738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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