View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12901_low_3 (Length: 464)
Name: NF12901_low_3
Description: NF12901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12901_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 131 - 448
Target Start/End: Original strand, 47437106 - 47437430
Alignment:
| Q |
131 |
tcttgaagggaagaaagagcttcatttctagaattttggttttgattacatctttccaaatcaccgattgaagaagtgatgttgattggcatgtctcgaa |
230 |
Q |
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| T |
47437106 |
tcttgaagggaagaaagagcttcatttctagaattttggttttgattacatctttccaaatcaccgattgaagaagtgatgttgattggcatgtctcgaa |
47437205 |
T |
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| Q |
231 |
attgttgtttttgcactggttgaggatgatcaaccacattttggtg--tgacact--ttttg---ttgttgtgcttgaagttgcgtgtaatgaagatcaa |
323 |
Q |
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| T |
47437206 |
attgttgtttttgcactggttgaggatgatcaaccacattttggtgttttgcactagtctcgaaattgttgtgcttgaagttgcgtgtaataaagatcaa |
47437305 |
T |
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| Q |
324 |
aattgcttggatcnnnnnnnnnnnnaagaccagacatgcttgtgtgatatatattattttacgtcactatgtttcttcaaacctcacggtgtattttatg |
423 |
Q |
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| T |
47437306 |
aattgcttggatctttttctttttcaagaccagacatgcttgtgtgatatatattattttacgtcactatgtttcttcaaacctcacggtgaattttatg |
47437405 |
T |
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| Q |
424 |
atatgtcaaaactgaagttaaaaac |
448 |
Q |
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| T |
47437406 |
atatgtcaaaactgaagttaaaaac |
47437430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 47436932 - 47437047
Alignment:
| Q |
17 |
aattgatgatgttaagtaagaaaaataactaaacaacacaagaaaatatgtttaa-ttatcttnnnnnnnnggaacagtatcggaacgattgaccctacg |
115 |
Q |
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| T |
47436932 |
aattgatgatgttaagtaagaaaaataactaaacaacacaagaaaatatgtttaatttatcttaaaaaaaaggaagagtatcagaacgattgatcctacg |
47437031 |
T |
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| Q |
116 |
attccatttcttgaat |
131 |
Q |
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| T |
47437032 |
attccatttcttgaat |
47437047 |
T |
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