View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12901_low_5 (Length: 240)

Name: NF12901_low_5
Description: NF12901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12901_low_5
NF12901_low_5
[»] chr3 (1 HSPs)
chr3 (16-225)||(50273253-50273462)
[»] chr1 (2 HSPs)
chr1 (23-226)||(1499274-1499477)
chr1 (23-226)||(1459266-1459469)
[»] chr8 (2 HSPs)
chr8 (23-225)||(26787137-26787339)
chr8 (53-126)||(975615-975688)
[»] chr6 (1 HSPs)
chr6 (47-142)||(3151585-3151680)
[»] chr4 (2 HSPs)
chr4 (47-171)||(48439770-48439894)
chr4 (59-138)||(44529636-44529715)
[»] chr2 (3 HSPs)
chr2 (47-142)||(45200171-45200266)
chr2 (58-114)||(15866291-15866347)
chr2 (47-114)||(21983202-21983269)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 50273462 - 50273253
Alignment:
Q  16 aaaatcctgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50273462 aaaatcctgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaat 50273363  T
Q  116 cctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50273362 cctaagaacttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctc 50273263  T
Q  216 ttgaacattt 225  Q
    ||||||||||    
T  50273262 ttgaacattt 50273253  T

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Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 1499274 - 1499477
Alignment:
Q  23 tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga 122  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || || |    
T  1499274 tgccaatcagggggccttccacttccattagccaaagcaatggccatgatagcagcagcttccataacccatgataaaggattccacataaaacccaaaa 1499373  T
Q  123 acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca 222  Q
    |||||||||||||||| ||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || | ||||  |||||||||    
T  1499374 acttcaaaaacttgctctcttttttctcttccaatttgtttggtccaaagacttgaagcctgttggctccttcttctgatgtcagaccttgtcttgaaca 1499473  T
Q  223 tttt 226  Q
    ||||    
T  1499474 tttt 1499477  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 23 - 226
Target Start/End: Complemental strand, 1459469 - 1459266
Alignment:
Q  23 tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga 122  Q
    |||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| |    
T  1459469 tgccaatcaggaggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgacaaagggttccacataaaacctaaaa 1459370  T
Q  123 acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca 222  Q
    |||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||| |||||||||| ||||| || | ||||  |||||||||    
T  1459369 acttcaaaaacttgttctcacttttctcttccagtttgtttggtccaaagacttgaagcctgctggctccttcctctgatgtcagaccttgtcttgaaca 1459270  T
Q  223 tttt 226  Q
    ||||    
T  1459269 tttt 1459266  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 26787339 - 26787137
Alignment:
Q  23 tgccaatcaggaggtcttccactgccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaaga 122  Q
    ||||||||||| || ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| || || |    
T  26787339 tgccaatcagggggccttccatcaccattagccaaagcaatggccataatagcagcagcttccataacccatgataaagggttccacataaaacccaaaa 26787240  T
Q  123 acttcaaaaacttgctttcccttttctcttccaatttgtttggaccaaacacttgaagcctgttggctccttcgtctgaggttaaacctgctcttgaaca 222  Q
    | |||||||||||| | ||  |||||||||| | ||||||  | ||||| |||| ||||||  | |||||||| || || || ||||||  ||| |||||    
T  26787239 atttcaaaaacttgttctcagttttctcttcgagtttgttatgtccaaatacttcaagcctactcgctccttcctccgatgtcaaaccttgtctcgaaca 26787140  T
Q  223 ttt 225  Q
    |||    
T  26787139 ttt 26787137  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 975615 - 975688
Alignment:
Q  53 gccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaactt 126  Q
    |||| |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||    
T  975615 gccatagcaatggccatgatagcagcagcttccataacccatgacaaaggattccacataaaccctaaaaactt 975688  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 142
Target Start/End: Complemental strand, 3151680 - 3151585
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc 142  Q
    ||||| ||||||||||| ||||| || || ||||||||||| |||||||| |  ||||||||||||||||| || |||||||||||||||||||||    
T  3151680 ccattggccaaagcaatagccatgattgctgcagcttccatcacccatgaaagaggattccacataaatcccaaaaacttcaaaaacttgctttcc 3151585  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 48439770 - 48439894
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcccttt 146  Q
    ||||| |||||  ||||||||||||  |||||| | |||||||||||||||| |||||||||||| || || ||||| || |  |||||||||||  |||    
T  48439770 ccatttgccaatccaatggccataagggcagcaacctccataacccatgatagtggattccacatgaaacccaagaatttaagtaacttgctttcagttt 48439869  T
Q  147 tctcttccaatttgtttggaccaaa 171  Q
    |||| || || ||||| ||||||||    
T  48439870 tctcctctaacttgttaggaccaaa 48439894  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 44529715 - 44529636
Alignment:
Q  59 gcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgct 138  Q
    ||||| ||||| |||||||| || ||||||||||| || |  ||||||||||||||||| |  || ||||||||||||||    
T  44529715 gcaatagccattatagcagctgcctccataacccaagaaagaggattccacataaatcccagaaatttcaaaaacttgct 44529636  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 45200171 - 45200266
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaatcctaagaacttcaaaaacttgctttcc 142  Q
    ||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |||||||||||||| || ||||| ||||  || |||||||||    
T  45200171 ccatttgccaatgcaatagccatgatagcagcagcttccatgacccatgagaggggattccacataaagcccaagaatttcaggaatttgctttcc 45200266  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 15866347 - 15866291
Alignment:
Q  58 agcaatggccataatagcagcagcttccataacccatgataatggattccacataaa 114  Q
    |||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||||||    
T  15866347 agcaattgccattaaagctgcagcttccatcacccatgataatggattccacataaa 15866291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 21983202 - 21983269
Alignment:
Q  47 ccattagccaaagcaatggccataatagcagcagcttccataacccatgataatggattccacataaa 114  Q
    ||||| |||||  |||||||||| || ||||| || ||||| ||||||||||||||||||||||||||    
T  21983202 ccattggccaatacaatggccatgattgcagctgcctccatgacccatgataatggattccacataaa 21983269  T

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