View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12901_low_6 (Length: 227)
Name: NF12901_low_6
Description: NF12901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12901_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42664825 - 42664625
Alignment:
| Q |
1 |
catgttgtactagaattagacacatgcaaagactcatttcctttccaagacttgatttttggtgaagaacatcttccatttgaacaagaaactcttccat |
100 |
Q |
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| T |
42664825 |
catgttgtactagaattagacacatgcaaagactcatttcctttccaagacttgatttttggtgaagaacatct---------------------tccat |
42664747 |
T |
|
| Q |
101 |
tcacaatcacagacatccttgaaaaatttaccaacttttcttcactgaaagttcaagttaaaaaacactactttagcagaacattcataaaactgaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42664746 |
tcacaatcacagacatccttgaaaaatttaccaacttttcttcactgaaagttcaagttaaaaaacactactttagcagaacattcataaaactgaacta |
42664647 |
T |
|
| Q |
201 |
ccaaacaccaaaacatgaatct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
42664646 |
ccaaacaccaaaacatgaatct |
42664625 |
T |
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