View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_high_11 (Length: 315)
Name: NF12902_high_11
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 10888178 - 10887885
Alignment:
| Q |
14 |
acaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888178 |
acaacaaccttcttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatc |
10888079 |
T |
|
| Q |
114 |
cgaacctctacacctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactg |
213 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10888078 |
cgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttcttcggcactg |
10887979 |
T |
|
| Q |
214 |
ccttcatctttcattacgatgatgatgaagacgaagttgtcgacatttctgcaaaattgaccggaggagtcgtgccaaagaagctacctatgtt |
307 |
Q |
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| T |
10887978 |
ccttcatcattcattacgatgatgatgaagacgaagtagtcgacaattctgcaaaacccaccggaggagttgtgccgaagaagctacctatgtt |
10887885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 244
Target Start/End: Original strand, 10866214 - 10866426
Alignment:
| Q |
32 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
131 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10866214 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10866313 |
T |
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| Q |
132 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
231 |
Q |
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|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
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| T |
10866314 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10866413 |
T |
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| Q |
232 |
atgatgatgaaga |
244 |
Q |
| |
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|||| || ||||| |
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| T |
10866414 |
atgaagaagaaga |
10866426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 10874091 - 10873879
Alignment:
| Q |
32 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
131 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10874091 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10873992 |
T |
|
| Q |
132 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
231 |
Q |
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|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
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| T |
10873991 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10873892 |
T |
|
| Q |
232 |
atgatgatgaaga |
244 |
Q |
| |
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|||| || ||||| |
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| T |
10873891 |
atgaagaagaaga |
10873879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 10879162 - 10878950
Alignment:
| Q |
32 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
131 |
Q |
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|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10879162 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10879063 |
T |
|
| Q |
132 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
231 |
Q |
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|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
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| T |
10879062 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10878963 |
T |
|
| Q |
232 |
atgatgatgaaga |
244 |
Q |
| |
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|||| || ||||| |
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| T |
10878962 |
atgaagaagaaga |
10878950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 32 - 244
Target Start/End: Complemental strand, 10884233 - 10884021
Alignment:
| Q |
32 |
actgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacacctctc |
131 |
Q |
| |
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|||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10884233 |
actgtacttaacaaatgttgttttctttggtctcttcttctccgtcgcctactttcttctcaacaggtggcgtgaaaagatccgaacctctacacctctc |
10884134 |
T |
|
| Q |
132 |
cacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatctttcattacg |
231 |
Q |
| |
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|||||||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| |||| ||||||| |||||||||| ||||||||| |
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| T |
10884133 |
cacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcggcattgccttcatccttcattacg |
10884034 |
T |
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| Q |
232 |
atgatgatgaaga |
244 |
Q |
| |
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|||| || ||||| |
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| T |
10884033 |
atgaagaagaaga |
10884021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 39675780 - 39676020
Alignment:
| Q |
25 |
cttcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctac |
124 |
Q |
| |
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|||||||||| || ||||||||| || ||||||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39675780 |
cttcttcactttacttaacaaacacttttttcttcggtctcttcttctccgtcgcatactttcttcttaaccggtggcgtgaaaagatccgaacctctac |
39675879 |
T |
|
| Q |
125 |
acctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcatcttt |
224 |
Q |
| |
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||||||||| ||||||||| |||| |||||| ||||| ||||||||||||| |||| | | ||||||||| ||||| || ||| |||||||||| || |
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| T |
39675880 |
acctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctttggcgttgccttcatcctt |
39675979 |
T |
|
| Q |
225 |
cattacgatgatgatgaagacgaagttgtcgacatttctgc |
265 |
Q |
| |
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||||||||||| || ||||| ||||||| |||||| |||| |
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| T |
39675980 |
cattacgatgaagaagaagatgaagttgctgacattgctgc |
39676020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 27 - 220
Target Start/End: Original strand, 10045775 - 10045968
Alignment:
| Q |
27 |
tcttcactgtatttaacaaacgctgttttctttggtctcttcttctccgccgcgtactttcttcttaacaggtggcgtgaaaagatccgaacctctacac |
126 |
Q |
| |
|
|||||||| || ||||||||||| ||||||| ||||| |||||||||| |||||| ||||||||| ||||||||||||| |||||||||||||| |||| |
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| T |
10045775 |
tcttcactctacttaacaaacgcaattttcttcggtcttttcttctccgtcgcgtattttcttcttcacaggtggcgtgagaagatccgaacctccacac |
10045874 |
T |
|
| Q |
127 |
ctctccacgtcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgcttttttcggcactgccttcat |
220 |
Q |
| |
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|||| || || |||||| |||||||||||| | ||| ||||||||||| |||||||| | |||||||| ||||| ||||||| || |||||| |
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| T |
10045875 |
ctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcggcattggcttcat |
10045968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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