View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_high_2 (Length: 840)
Name: NF12902_high_2
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 739; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 7 - 826
Target Start/End: Complemental strand, 11843972 - 11843153
Alignment:
| Q |
7 |
tccaagaatatagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaacattggaatcataacaatat |
106 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11843972 |
tccaacaatgtagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaactttggaatcataacaatat |
11843873 |
T |
|
| Q |
107 |
gaatctgaaggaagttgaaatgtcgaattaaccaaaatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaagtacgcaaat |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11843872 |
gaatctgaaggaagttgaaatgtcgaattaaccaaaatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaagtactcaaat |
11843773 |
T |
|
| Q |
207 |
atgacccatcaaaagatatccaattatcacttaaaatcaaagcataactacactgatcaatactttgttcccttaaaccttgaaatgttgcattatattc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
11843772 |
atgacccatcaaaagatatccaattatcacttaaaatcaaagcataactacactgatcaatactttgttcgcttaaaccttgaaacgttgcattatattc |
11843673 |
T |
|
| Q |
307 |
cgaaagatgcgtaggcaatgaagtttcacaacaatatcttccattgcaacggtcattactggaattgaagttgttgttaaagttgctatcatcacaaatt |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
11843672 |
cgaaagatgcgtaggcaatgaagtttcacaacaatatcttccattgcaacggtcgttactggaattgaagttgttgttaaagttgccatcatcgcaaatt |
11843573 |
T |
|
| Q |
407 |
gatacgcaaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctagaaatttgttgtaactctgggaatacataaaag |
506 |
Q |
| |
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| T |
11843572 |
gatacgcaaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctagaaatttgttgtaactctgggaatacataaaag |
11843473 |
T |
|
| Q |
507 |
gactaactccaaggtttatagtaacggttttattgttaatannnnnnngacagtttgaatgataaattggattcataatctcaaccatgcctaagtccag |
606 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
11843472 |
gactaactccaaggtttatagtaacggttttattgttaatattttgttgacagtttgaatgataaattggattcataatctcaaccatgcctaagtctag |
11843373 |
T |
|
| Q |
607 |
gtaaaaattatttacctcaagatttaaagacttcaaatatggttttggattttgagaattgttgtctaatttgcactctatttcgaaccacttgtctgca |
706 |
Q |
| |
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| T |
11843372 |
gtaaacattatttacctcaagatttaaagacttcaaatatggttttggattttgagaactgttgtctaatttgcactctatttcgaaccacttgtctgca |
11843273 |
T |
|
| Q |
707 |
taacaacgaggttctttcattccgaatgggaaagggattgacattgttccgcatgatgaattacaaccttgttgtgctatgattccatcttcttgttgtg |
806 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11843272 |
taacaacgaggttctttcattccgaatgggaaagggattgacattgttccgcatgttgaattacaaccttgttgtgctatgattccatcttcttgttgtg |
11843173 |
T |
|
| Q |
807 |
ctgttgttaatggagaaaat |
826 |
Q |
| |
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||| ||||||||||| |||| |
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| T |
11843172 |
ctgatgttaatggaggaaat |
11843153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 826
Target Start/End: Complemental strand, 11848686 - 11847835
Alignment:
| Q |
17 |
tagggattgccggtgtaacccgaggagcattgacatttccgaccagtggttctgttatttaaagatgtaacattggaatcataacaat------atgaat |
110 |
Q |
| |
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||||||||||| |||||||||| ||||||| |||| |||||||||| |||||||||||| |||||||| | |||||||||||||| |||||| |
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| T |
11848686 |
tagggattgccaaagtaacccgagaagcattggcattgccgaccagtgtttctgttatttatggatgtaacttgggaatcataacaatttgaatatgaat |
11848587 |
T |
|
| Q |
111 |
ctgaaggaagttgaaatgtcgaattaaccaa------------aatttcccactcaagcattgctggtgcatactccatattccccaactcattaaaa-- |
196 |
Q |
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| T |
11848586 |
ctgaaggaagttgaaatgtagaattaatcaacatatcattcaaaatttcccactcaagcattgctggtgcatactccatatcctccaacttattaaaatt |
11848487 |
T |
|
| Q |
197 |
-------------gtacgcaaatatga------cccatcaaaagatatccaattatcacttaaaatcaaagcataactacactgatcaatactttgttcc |
277 |
Q |
| |
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|||| ||||||||| |||||||||| ||| |||| | |||||||||||||||||| ||||||| | |||| || || || |
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| T |
11848486 |
ctcaagataataagtactcaaatatgatgacaacccatcaaaatatacccaacgacgacttaaaatcaaagcatagctacactcactaatatttggtccc |
11848387 |
T |
|
| Q |
278 |
cttaaaccttgaaatgttgcattatattccgaaagatgcgtaggcaatgaagtttcacaacaatatcttccattgcaacggtcattactggaattgaagt |
377 |
Q |
| |
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||||||||||| || || ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| ||| |||| ||||||||| |
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| T |
11848386 |
cttaaaccttgtaacgtcgcattatattctgaaagatgcataggcaatgaagtttcacaacaatatcttccattacaaccatcactactcaaattgaagt |
11848287 |
T |
|
| Q |
378 |
---tgttgttaaagttgctatcatcacaaattgatacgcaaccaccaaccgttgttccatttgattgtagaaaagcaagattgttacatccaacggctag |
474 |
Q |
| |
|
|| |||| | |||| | ||||| ||||||||||| |||||||||||| | ||||| ||||||||| |||||||||||||||||||||||| ||||| |
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| T |
11848286 |
aattgctgtttatgttgttgtcatcgcaaattgatacacaaccaccaaccatgtttccacttgattgtataaaagcaagattgttacatccaacagctag |
11848187 |
T |
|
| Q |
475 |
aaatttgttgtaactctgggaatacataaaaggactaactccaaggtttatagtaacggttttattgttaatannnnnnngacagtttgaatgataaatt |
574 |
Q |
| |
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||||||||||||| ||| ||||| || ||||||| |||||||||||||| ||||||||||||||||| || ||||||||| | ||| |||| |
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| T |
11848186 |
aaatttgttgtaatcctgtgaatatatgaaaggaccgcctccaaggtttataataacggttttattgttattatattttcgacagtttggacgatgaatt |
11848087 |
T |
|
| Q |
575 |
ggattcataatctcaaccatgcctaagtccaggtaaaaattatttacctcaagatttaaagacttcaaatatggttttggattttgagaattgttgtcta |
674 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11848086 |
ggattcataatctcaaccaagcctaagtccaggtaaaaattatttacctcaagatttaaagacttcaaatatggttttggattttgagaattgttgtcta |
11847987 |
T |
|
| Q |
675 |
atttgcactctatttcgaaccacttgtctgcataacaacgaggttctttcattccgaatgggaaagggattgacattgttccgcatgatgaattacaacc |
774 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| |
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| T |
11847986 |
atttgcactctatttcaaaccatttgtctgcataacaacgaggttctttcattccgaatggaaaaggaattgacattgttccgcatgttgaattacaacc |
11847887 |
T |
|
| Q |
775 |
ttgttgtgctatgattccatcttcttgttgtgctgttgttaatggagaaaat |
826 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
11847886 |
ttgctgtgctatgattccatcttcttgttgtgctgatgttaatggaggaaat |
11847835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 617 - 747
Target Start/End: Complemental strand, 26885326 - 26885193
Alignment:
| Q |
617 |
tttacctcaagatttaaagacttcaaatatggttttggattttgagaa---ttgttgtctaatttgcactctatttcgaaccacttgtctgcataacaac |
713 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| ||| | | |||| || ||||| ||||| |||||||||||||||||| || ||||||||||| |
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|
| T |
26885326 |
tttacctcaagatttaaagactttaaataaggtttaggaatattagaagattttttgtcaaatttacactctatttcgaaccacatgcctgcataacaat |
26885227 |
T |
|
| Q |
714 |
gaggttctttcattccgaatgggaaagggattga |
747 |
Q |
| |
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| ||||||| |||||| ||||| ||||| ||||| |
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| T |
26885226 |
gtggttcttccattccaaatggaaaaggaattga |
26885193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 651
Target Start/End: Complemental strand, 26882558 - 26882478
Alignment:
| Q |
571 |
aattggattcataatctcaaccatgcctaagtccaggtaaaaattatttacctcaagatttaaagacttcaaatatggttt |
651 |
Q |
| |
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|||||| |||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
26882558 |
aattgggttcaaaatctcaatcatgcctaagtaatcgttaaaatgttttacctcaagatttaaagacttcaaataaggttt |
26882478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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