View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_high_9 (Length: 384)
Name: NF12902_high_9
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 374
Target Start/End: Original strand, 42275182 - 42275522
Alignment:
| Q |
30 |
attgttttttcactatactcccctgctttggttccatactcaaccatagttactgtttccttgtcttccgttatccatgacactctcatcttatctttcc |
129 |
Q |
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| T |
42275182 |
attgttttttcactatactcccctgctttggttccatactcaaccatagtttctgtttccttgtcttccgttatccatgacactctcatcttatctttcc |
42275281 |
T |
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| Q |
130 |
ccaccaatgaaatatgcacctacaagcaaaaatatgtcacaaacaacgtcactaatcttaaaatgaccaatttaatgtatgattatagtcaaatttgttt |
229 |
Q |
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| T |
42275282 |
ccaccaatgaaatatgcacctacaagcaaaaaaatgtcacaaacaacgtcactaatcttaaaatgaccaatttaatgtatgattatagtcaaatttgttt |
42275381 |
T |
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| Q |
230 |
tgaaatttttcactaaatgagtttgtgactggttggtttatttagtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaaatttataatga |
329 |
Q |
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| T |
42275382 |
tgaattttttcactaaatgagtttgtgac----tggtttatttagtgtgacaaaatatatgaatttatcaatgagttaaggtaactaaaatttataatga |
42275477 |
T |
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| Q |
330 |
acctgttgaggttctgaattggagcgttgatggggagtgatgatg |
374 |
Q |
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| T |
42275478 |
acctgttgaggttctgaattggagcgttgatggggagtgatgatg |
42275522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 26275458 - 26275401
Alignment:
| Q |
93 |
tcttccgttatccatgacactctcatcttatctttccccaccaatgaaatatgcacct |
150 |
Q |
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| T |
26275458 |
tcttcagttatccatgatactctcatatgatctttccctaccaacgaaatgtgcacct |
26275401 |
T |
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