View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12902_low_1 (Length: 843)

Name: NF12902_low_1
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12902_low_1
NF12902_low_1
[»] chr5 (11 HSPs)
chr5 (11-829)||(7999112-7999930)
chr5 (753-808)||(15015778-15015833)
chr5 (759-814)||(16458072-16458127)
chr5 (753-812)||(42500313-42500372)
chr5 (753-800)||(13697847-13697894)
chr5 (760-814)||(29925762-29925816)
chr5 (756-814)||(32941391-32941449)
chr5 (753-814)||(3735579-3735640)
chr5 (588-645)||(4014434-4014491)
chr5 (627-688)||(14295548-14295609)
chr5 (760-809)||(36227721-36227770)
[»] chr4 (15 HSPs)
chr4 (593-701)||(2996581-2996689)
chr4 (753-814)||(43505877-43505938)
chr4 (753-812)||(54069505-54069564)
chr4 (762-812)||(33587051-33587101)
chr4 (753-814)||(403448-403509)
chr4 (759-808)||(31076480-31076529)
chr4 (625-701)||(27123306-27123382)
chr4 (594-645)||(40532604-40532655)
chr4 (753-812)||(42404086-42404145)
chr4 (593-671)||(53673642-53673720)
chr4 (753-814)||(15177290-15177351)
chr4 (762-811)||(24169185-24169234)
chr4 (753-814)||(41336682-41336742)
chr4 (588-653)||(47800626-47800691)
chr4 (753-814)||(50681177-50681238)
[»] chr2 (9 HSPs)
chr2 (753-815)||(32592507-32592569)
chr2 (759-814)||(42659245-42659300)
chr2 (753-813)||(15305579-15305639)
chr2 (594-651)||(34652040-34652097)
chr2 (761-806)||(41812186-41812231)
chr2 (779-814)||(31744285-31744320)
chr2 (753-814)||(26201949-26202011)
chr2 (753-814)||(20933676-20933737)
chr2 (756-813)||(43279618-43279675)
[»] chr6 (8 HSPs)
chr6 (753-814)||(18076117-18076178)
chr6 (753-808)||(30536646-30536701)
chr6 (768-814)||(6538438-6538484)
chr6 (625-701)||(2460105-2460181)
chr6 (759-814)||(6016469-6016524)
chr6 (753-808)||(30536405-30536460)
chr6 (757-814)||(6200480-6200537)
chr6 (753-814)||(12836260-12836321)
[»] chr8 (13 HSPs)
chr8 (754-814)||(38353271-38353330)
chr8 (750-806)||(12497316-12497372)
chr8 (759-814)||(32975981-32976036)
chr8 (776-814)||(38750279-38750317)
chr8 (753-814)||(1058162-1058223)
chr8 (588-701)||(11569411-11569524)
chr8 (759-814)||(14956389-14956444)
chr8 (753-812)||(16825625-16825684)
chr8 (763-809)||(35644079-35644125)
chr8 (588-637)||(1433551-1433600)
chr8 (588-645)||(1930038-1930095)
chr8 (753-814)||(12976134-12976195)
chr8 (588-645)||(27028834-27028891)
[»] chr7 (13 HSPs)
chr7 (750-814)||(21568713-21568777)
chr7 (759-814)||(48140137-48140192)
chr7 (755-812)||(420283-420340)
chr7 (753-814)||(46078068-46078129)
chr7 (599-701)||(28165105-28165207)
chr7 (753-814)||(45806565-45806626)
chr7 (593-645)||(529383-529435)
chr7 (753-801)||(45806414-45806462)
chr7 (759-814)||(4970882-4970937)
chr7 (594-644)||(25596042-25596092)
chr7 (753-814)||(9210549-9210610)
chr7 (762-803)||(31247666-31247707)
chr7 (593-638)||(47130802-47130847)
[»] chr3 (13 HSPs)
chr3 (753-814)||(20170444-20170505)
chr3 (593-701)||(37273142-37273250)
chr3 (760-812)||(18405927-18405979)
chr3 (629-701)||(20192560-20192632)
chr3 (625-685)||(34382982-34383042)
chr3 (760-815)||(51929455-51929511)
chr3 (778-808)||(901808-901838)
chr3 (753-814)||(1508668-1508730)
chr3 (760-814)||(12862342-12862396)
chr3 (753-814)||(5331215-5331275)
chr3 (779-812)||(27822721-27822754)
chr3 (753-814)||(29520567-29520627)
chr3 (588-653)||(41452526-41452591)
[»] chr1 (10 HSPs)
chr1 (594-643)||(4445717-4445766)
chr1 (588-645)||(24915061-24915118)
chr1 (753-811)||(18556851-18556909)
chr1 (753-814)||(42174778-42174839)
chr1 (626-701)||(32515395-32515470)
chr1 (776-814)||(33541819-33541857)
chr1 (588-669)||(4622096-4622177)
chr1 (753-814)||(14385851-14385912)
chr1 (596-645)||(31517750-31517799)
chr1 (753-814)||(37517282-37517343)


Alignment Details
Target: chr5 (Bit Score: 795; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 795; E-Value: 0
Query Start/End: Original strand, 11 - 829
Target Start/End: Complemental strand, 7999930 - 7999112
Alignment:
Q  11 cacagacaccattcaagagctccttttcaacaggttcaggatttgtaaaactgaattggagatcacccgctgaacttgcagcacaagtatcaaagctctt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7999930 cacagacaccattcaagagctccttttcaacaggttcaggatttgtaaaactgaattggagatcacccgctgaacttgcagcacaagtatcaaagctctt 7999831  T
Q  111 atcatcaaccttttcgtcgctggaaacattcttcttggacagcacactggcctcagacgaactcttgtggagacgagggccacgacgtttatggttaatg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7999830 atcatcaaccttttcgtcgctggaaacattcttcttggacagcacactggcctcagacgaactcttgtggagacgcgggccacgacgtttatggttaatg 7999731  T
Q  211 atgtatggtgaaggagggaatgaagaaggagaatctacaactggaagttgtttcacctcaggtgtagtataaagtgctggctttaaccgaggacgaggaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7999730 atgtatggtgaaggagggaatgaagaaggagaatctacaactggaagttgtttcacctcaggtgtagtataaagtgctggctttaaccgaggacgaggaa 7999631  T
Q  311 ccttatttttcacaggtggagcactagtagtcctctcaagtttttgaacttttggtacaggcattgaagttggagcaggtttatcaattggcttggaagc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7999630 ccttatttttcacaggtggagcactagtagtcctctcaagtttttgaacttttggtacaggcattgaagttggagcaggtttatcaattggcttggaagc 7999531  T
Q  411 tccagtctctaaaaacctatcaaacgctattgcagtatatgccggcatgtctgtaaattacaaagacatataaacttgaatacttcaatacaacttctca 510  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7999530 tccagtctctaaaaacctatcaaacgctattgcagtatatgtcggcatgtctgtaaattacagagacatataaacttgaatacttcaatacaacttctca 7999431  T
Q  511 tccaagcacaatttttagcaatctataccctgtttgaataaacaagagataaataaaatcagacttttttgtgttaaaagcagttttcataagctgtctt 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7999430 tccaagcacaatttttagcaatctataccctgtttgaataaacaagagataaataaaatcagacttttttgtgttaaaagcagttttcataagctgtctt 7999331  T
Q  611 ggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgacaagtgcttatcaacatgtg 710  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7999330 ggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtttgacaagtgcttatcaacatgtg 7999231  T
Q  711 ctgagctgttcaacattagcagttgtctgcttatgtgctaagttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgc 810  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7999230 ctgagctgttcaacattagcagttgtctgcttatgtgctaagttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgc 7999131  T
Q  811 ttatatctaaattcctaat 829  Q
    ||||||| |||||| ||||    
T  7999130 ttatatccaaattcttaat 7999112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 753 - 808
Target Start/End: Complemental strand, 15015833 - 15015778
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagc 808  Q
    ||||| |||||| ||||||||| | ||||||| |||||||||||||||||||||||    
T  15015833 ttaacgttatttcaccttttgctacaaaaatagcttatgcaagcttatacataagc 15015778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 759 - 814
Target Start/End: Original strand, 16458072 - 16458127
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||| ||||||| ||||||||| |||||||||||||||| |||||| |||||    
T  16458072 ttattttatcttttgctataaaaatagcttatgcaagcttatatataagcacttat 16458127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 753 - 812
Target Start/End: Original strand, 42500313 - 42500372
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgctt 812  Q
    ||||| |||||||| ||||||  ||||||||| ||||||||||||||||||| |||||||    
T  42500313 ttaactttattttatcttttgatataaaaatagcttatgcaagcttatacattagcgctt 42500372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 800
Target Start/End: Original strand, 13697847 - 13697894
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttat 800  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||    
T  13697847 ttaacattattttatcttttgctataaaaataatttatgcaagtttat 13697894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 760 - 814
Target Start/End: Complemental strand, 29925816 - 29925762
Alignment:
Q  760 tattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||| ||||||| ||||||||| ||||||||||| ||||| |||||| ||||    
T  29925816 tattttatcttttgctataaaaatagcttatgcaagcatatacttaagcgtttat 29925762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 756 - 814
Target Start/End: Complemental strand, 32941449 - 32941391
Alignment:
Q  756 acattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||||| |||||||  ||||| || | ||||||||||||||| |||||||||||    
T  32941449 acattattttatcttttgctctaaaactagcctatgcaagcttatacgtaagcgcttat 32941391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 3735579 - 3735640
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||| | ||||||| ||| ||||| |||||| |||||||| |||||||||||||    
T  3735579 ttaactttatttcatcttttgctatagaaatagcttatgtaagcttatccataagcgcttat 3735640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 645
Target Start/End: Complemental strand, 4014491 - 4014434
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttat 645  Q
    |||| ||||||||||||| ||||||||| | | ||| |||||| ||||||||||||||    
T  4014491 aagctgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttat 4014434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 627 - 688
Target Start/End: Original strand, 14295548 - 14295609
Alignment:
Q  627 taagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtct 688  Q
    |||| |||||||||||||| |||||||  |||||||||  |||||||| ||||| |||||||    
T  14295548 taagctgaaaacagcttatcgacatatcataagctgttttcataagctctctcagacagtct 14295609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 760 - 809
Target Start/End: Complemental strand, 36227770 - 36227721
Alignment:
Q  760 tattttaccttttgccataaaaataacttatgcaagcttatacataagcg 809  Q
    ||||||| ||||||| |||||||||  ||| |||||||||||||||||||    
T  36227770 tattttatcttttgctataaaaatagattaagcaagcttatacataagcg 36227721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 593 - 701
Target Start/End: Original strand, 2996581 - 2996689
Alignment:
Q  593 gttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgaca 692  Q
    ||||||||||||| ||||||||||| | ||| ||||||||||||| ||||||| ||||| |  |||| ||||  |||||||| ||||| ||||||| | |    
T  2996581 gttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaa 2996680  T
Q  693 agtgcttat 701  Q
    |||||||||    
T  2996681 agtgcttat 2996689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 43505938 - 43505877
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||    
T  43505938 ttaacgttattttatcttttgctataaaaatagcttatgcaagcttatacataagtgcttat 43505877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 753 - 812
Target Start/End: Original strand, 54069505 - 54069564
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgctt 812  Q
    |||||||||||||| ||||||  ||||||||| | |||||||||||||||||||| ||||    
T  54069505 ttaacattattttatcttttgatataaaaatagcatatgcaagcttatacataagtgctt 54069564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 762 - 812
Target Start/End: Original strand, 33587051 - 33587101
Alignment:
Q  762 ttttaccttttgccataaaaataacttatgcaagcttatacataagcgctt 812  Q
    ||||| |||| || ||||||||| |||||||||||||||||||||||||||    
T  33587051 ttttatctttcgctataaaaatagcttatgcaagcttatacataagcgctt 33587101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 403509 - 403448
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||| ||||||| |||||| ||||||| ||||||||||| ||||||| ||||    
T  403509 ttaacgttattttatcttttgctataaaagtaacttacgcaagcttatagataagcgtttat 403448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 759 - 808
Target Start/End: Original strand, 31076480 - 31076529
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagc 808  Q
    |||||||| |||||||  |||||||| |||||||||||||||||||||||    
T  31076480 ttattttatcttttgctctaaaaatagcttatgcaagcttatacataagc 31076529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 701
Target Start/End: Complemental strand, 27123382 - 27123306
Alignment:
Q  625 aataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgacaagtgcttat 701  Q
    ||||||||||||||| |||| |||||| |  |||| |||| ||||||||| ||||| ||||||| |||||| |||||    
T  27123382 aataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttat 27123306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 645
Target Start/End: Complemental strand, 40532655 - 40532604
Alignment:
Q  594 ttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttat 645  Q
    ||||||||||||||||||||||||||  || |||||| |||||||| |||||    
T  40532655 ttttcataagctgtcttggagagcctacgaaaataagatgaaaacaacttat 40532604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 812
Target Start/End: Original strand, 42404086 - 42404145
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgctt 812  Q
    |||||||||||||| ||||||| ||||||| | | ||||||| |||||||||||| ||||    
T  42404086 ttaacattattttatcttttgctataaaaagagcgtatgcaaacttatacataagtgctt 42404145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 593 - 671
Target Start/End: Complemental strand, 53673720 - 53673642
Alignment:
Q  593 gttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccataa 671  Q
    ||||||||||||| ||||||||||| | ||  |||||| |||||||| ||||| |||||||| || | |||| ||||||    
T  53673720 gttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgttgtttccataa 53673642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 15177290 - 15177351
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||| |||| || || |||||| |||||||||||||||||||| | ||||||    
T  15177290 ttaacgttattttatctttagctattaaaatagcttatgcaagcttatacatacgtgcttat 15177351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 811
Target Start/End: Complemental strand, 24169234 - 24169185
Alignment:
Q  762 ttttaccttttgccataaaaataacttatgcaagcttatacataagcgct 811  Q
    ||||||| |||| |||||||||| |||||| ||||| |||||||||||||    
T  24169234 ttttaccatttgtcataaaaatagcttatgtaagctcatacataagcgct 24169185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 41336742 - 41336682
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||| |||| || ||||||||| ||||||||||| |||||||||| ||||||    
T  41336742 ttaactttattttatcttt-gctataaaaatagcttatgcaagcctatacataagtgcttat 41336682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 653
Target Start/End: Original strand, 47800626 - 47800691
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatat 653  Q
    |||| ||||||||||||| ||||| ||||| | ||| |||||| ||||||| ||||||| ||||||    
T  47800626 aagctgttttcataagctatcttgaagagcttatgaaaataagctgaaaaccgcttataaacatat 47800691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 50681177 - 50681238
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||||||||| ||| | | ||||||||| ||| || |||||||||||||| |||||||    
T  50681177 ttaacattattttatcttatcctataaaaatagcttttgtaagcttatacataaacgcttat 50681238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 753 - 815
Target Start/End: Complemental strand, 32592569 - 32592507
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttata 815  Q
    |||||||||||||| ||||| | |||||||||  |||||||||||||||||||||||||||||    
T  32592569 ttaacattattttatctttttctataaaaatagtttatgcaagcttatacataagcgcttata 32592507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 759 - 814
Target Start/End: Original strand, 42659245 - 42659300
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||||    
T  42659245 ttattttaccattttccataaaaatagcttatgtaagcttatacataagcgcttat 42659300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 753 - 813
Target Start/End: Complemental strand, 15305639 - 15305579
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgctta 813  Q
    |||||||||||||| | ||||| ||||||||| |||||||||||||||||| |||| ||||    
T  15305639 ttaacattattttatcatttgctataaaaatagcttatgcaagcttatacacaagcactta 15305579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 594 - 651
Target Start/End: Complemental strand, 34652097 - 34652040
Alignment:
Q  594 ttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacat 651  Q
    |||||||||||| ||||||||||| | ||  ||||||||||||||||||||| |||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacat 34652040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 761 - 806
Target Start/End: Original strand, 41812186 - 41812231
Alignment:
Q  761 attttaccttttgccataaaaataacttatgcaagcttatacataa 806  Q
    |||||||| ||||||||||||||| |||||| ||||||||||||||    
T  41812186 attttaccatttgccataaaaatagcttatgtaagcttatacataa 41812231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 779 - 814
Target Start/End: Complemental strand, 31744320 - 31744285
Alignment:
Q  779 aaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31744320 aaaataacttacgcaagcttatacataagcgcttat 31744285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 26202011 - 26201949
Alignment:
Q  753 ttaacattattttacct-tttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||| || ||||| ||||||||| |||||||||||||||| ||||| ||||||    
T  26202011 ttaacgttattttatctctttgctataaaaatagcttatgcaagcttatatataagggcttat 26201949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 20933737 - 20933676
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||||||||| ||||||   ||||||||  |||||||||| |||||||||| ||||||    
T  20933737 ttaacattattttatcttttgttgtaaaaatagattatgcaagcctatacataagtgcttat 20933676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 813
Target Start/End: Original strand, 43279618 - 43279675
Alignment:
Q  756 acattattttaccttttgccataaaaataacttatgcaagcttatacataagcgctta 813  Q
    ||||||||||| ||||||  ||||||||| |||||||||||||| | || ||||||||    
T  43279618 acattattttatcttttgatataaaaatagcttatgcaagcttagaaattagcgctta 43279675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 18076178 - 18076117
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||  ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  18076178 ttaaccttattttctcttttgctataaaaataacttatgcaagcttatacataagtgcttat 18076117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 753 - 808
Target Start/End: Original strand, 30536646 - 30536701
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagc 808  Q
    ||||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||    
T  30536646 ttaacgttatcttatcttttgctataaaaatagcttatgcaagcttatacataagc 30536701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 768 - 814
Target Start/End: Complemental strand, 6538484 - 6538438
Alignment:
Q  768 cttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||||    
T  6538484 cttttgctaaaaaactaacttatgcaagcttatacataagcgcttat 6538438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 701
Target Start/End: Complemental strand, 2460181 - 2460105
Alignment:
Q  625 aataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgacaagtgcttat 701  Q
    ||||||||||||||| |||| |||||| |  |||| |||| ||||||||| ||||| ||||||| |||||| |||||    
T  2460181 aataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttat 2460105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 814
Target Start/End: Original strand, 6016469 - 6016524
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||| ||||||  || ||||||||||||||||| ||||| ||||||||||||    
T  6016469 ttattttatcttttgttatgaaaataacttatgcaagattatatataagcgcttat 6016524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 808
Target Start/End: Complemental strand, 30536460 - 30536405
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagc 808  Q
    |||||||||||||| | ||||| |||| |||| ||||||||| |||||||||||||    
T  30536460 ttaacattattttatcatttgctataataatagcttatgcaaacttatacataagc 30536405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 757 - 814
Target Start/End: Complemental strand, 6200537 - 6200480
Alignment:
Q  757 cattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||||||||||| | |||||| || ||||| ||| ||||| |||||||||||||    
T  6200537 cattattttaccttttactataaaagtagcttatacaaacttatgcataagcgcttat 6200480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 12836260 - 12836321
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||||||||  ||||||  ||||| |  ||||||||||||||||||||||| |||||    
T  12836260 ttaacattattttatattttgctttaaaagttgcttatgcaagcttatacataagctcttat 12836321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 754 - 814
Target Start/End: Complemental strand, 38353330 - 38353271
Alignment:
Q  754 taacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  38353330 taacattattttatcttttgc-ataaaaatagcttatgcaagcttatacataagcgattat 38353271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 750 - 806
Target Start/End: Original strand, 12497316 - 12497372
Alignment:
Q  750 aagttaacattattttaccttttgccataaaaataacttatgcaagcttatacataa 806  Q
    |||||||| |||||||| ||||||| ||||||||  |||||||||||||||||||||    
T  12497316 aagttaactttattttatcttttgctataaaaatggcttatgcaagcttatacataa 12497372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 759 - 814
Target Start/End: Complemental strand, 32976036 - 32975981
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||| ||||||| ||||||||| |||||||||||||||| |||||| |||||    
T  32976036 ttattttatcttttgctataaaaatagcttatgcaagcttatatataagcacttat 32975981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 776 - 814
Target Start/End: Complemental strand, 38750317 - 38750279
Alignment:
Q  776 ataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  38750317 ataaaaatagcttatgcaagcttatacataagcgcttat 38750279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 1058162 - 1058223
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| ||||||||   ||||| ||||||||| |||||| ||||||||||||||||||||||    
T  1058162 ttaactttattttatgatttgctataaaaatagcttatgtaagcttatacataagcgcttat 1058223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 588 - 701
Target Start/End: Complemental strand, 11569524 - 11569411
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtc 687  Q
    |||| ||||||||||||| || |||||||  | ||| |||||| |||||||| |||||  |||| |  ||||||||| ||||||||| ||| | ||||||    
T  11569524 aagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaacagtc 11569425  T
Q  688 tgacaagtgcttat 701  Q
    | ||||||| ||||    
T  11569424 tcacaagtggttat 11569411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 814
Target Start/End: Original strand, 14956389 - 14956444
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||| | ||||| | ||||||||| |||||||||||||||||||||| ||||||    
T  14956389 ttatttcatcttttacaataaaaatagcttatgcaagcttatacataagtgcttat 14956444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 753 - 812
Target Start/End: Original strand, 16825625 - 16825684
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgctt 812  Q
    |||||||||||||| | ||| | |||| |||| |||||||||| ||||||||||||||||    
T  16825625 ttaacattattttatcctttactataagaatagcttatgcaaggttatacataagcgctt 16825684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 763 - 809
Target Start/End: Original strand, 35644079 - 35644125
Alignment:
Q  763 tttaccttttgccataaaaataacttatgcaagcttatacataagcg 809  Q
    |||| ||||||||| ||||||| |||| |||||||||||||||||||    
T  35644079 tttatcttttgccagaaaaatagcttaagcaagcttatacataagcg 35644125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 637
Target Start/End: Original strand, 1433551 - 1433600
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaa 637  Q
    |||||||||||||||||| || |||||||| | ||| |||||||||||||    
T  1433551 aagcagttttcataagctatcctggagagcttatgaaaataagttgaaaa 1433600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 1930038 - 1930095
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttat 645  Q
    |||| ||||||||||||| |||||| || | ||||| |||||| ||||||||||||||    
T  1930038 aagctgttttcataagctatcttggtgaccttgtgaaaataagctgaaaacagcttat 1930095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 12976195 - 12976134
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| ||||||||  |||||| ||| ||||| ||||||  |||||||||||||||||||||    
T  12976195 ttaactttattttatattttgctatagaaatagcttatgtgagcttatacataagcgcttat 12976134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 645
Target Start/End: Original strand, 27028834 - 27028891
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttat 645  Q
    |||| ||||||||||||| ||||||||||| | ||| |||||| |||||| |||||||    
T  27028834 aagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttat 27028891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 750 - 814
Target Start/End: Original strand, 21568713 - 21568777
Alignment:
Q  750 aagttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||||| ||| || ||||||| ||||||||| |||||||||||||||||||||| ||||||    
T  21568713 aagttaacatcattctatcttttgctataaaaatagcttatgcaagcttatacataagtgcttat 21568777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 759 - 814
Target Start/End: Complemental strand, 48140192 - 48140137
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||| ||||||  ||||||||| |||||||||||||||||||||||||||||    
T  48140192 ttattttatcttttgttataaaaatagcttatgcaagcttatacataagcgcttat 48140137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 755 - 812
Target Start/End: Complemental strand, 420340 - 420283
Alignment:
Q  755 aacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgctt 812  Q
    |||||||||||| ||||||| ||||| ||| ||||||||||||||||||||| |||||    
T  420340 aacattattttatcttttgctataaacatagcttatgcaagcttatacataaacgctt 420283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 46078129 - 46078068
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| || ||||| ||||| | |||||||||||||||| ||||||||||||||||||||||    
T  46078129 ttaactttgttttatctttttctataaaaataacttatgtaagcttatacataagcgcttat 46078068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 599 - 701
Target Start/End: Original strand, 28165105 - 28165207
Alignment:
Q  599 ataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgacaagtgct 698  Q
    ||||||| || |||||||| | ||  |||||||||||||||||||||  |||  | || ||||||| ||||||||||||||| | ||||| | |||||||    
T  28165105 ataagctatcatggagagcttatggaaataagttgaaaacagcttatgaacaggtcttgagctgtttccataagctatctcaaagagtctcataagtgct 28165204  T
Q  699 tat 701  Q
    |||    
T  28165205 tat 28165207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 45806565 - 45806626
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||  ||||||| ||||| ||| |||||||||||||||||||||| ||||||    
T  45806565 ttaacgttattttctcttttgctataaacatagcttatgcaagcttatacataagtgcttat 45806626  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 593 - 645
Target Start/End: Original strand, 529383 - 529435
Alignment:
Q  593 gttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttat 645  Q
    ||||||||||||| ||||||||||| | ||| |||| ||||||||||||||||    
T  529383 gttttcataagctatcttggagagcttatgaaaatatgttgaaaacagcttat 529435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 753 - 801
Target Start/End: Original strand, 45806414 - 45806462
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttata 801  Q
    ||||| |||||||| ||||||| ||||||||| ||||||||||||||||    
T  45806414 ttaacgttattttatcttttgctataaaaatagcttatgcaagcttata 45806462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 759 - 814
Target Start/End: Original strand, 4970882 - 4970937
Alignment:
Q  759 ttattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||| ||||||| ||| ||||| |||||| |||||||||||||| |||||||    
T  4970882 ttattttatcttttgctatagaaatagcttatgtaagcttatacataaccgcttat 4970937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 594 - 644
Target Start/End: Original strand, 25596042 - 25596092
Alignment:
Q  594 ttttcataagctgtcttggagagcctgtgagaataagttgaaaacagctta 644  Q
    |||||||||||| ||||||||||| | ||| ||||||||||||||| ||||    
T  25596042 ttttcataagctatcttggagagcttatgaaaataagttgaaaacaactta 25596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 9210610 - 9210549
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||| ||||||  |||| | |||||| || |||||||||||||||||||||||| ||||    
T  9210610 ttaacatcattttatttttttctataaaagtagcttatgcaagcttatacataagcgattat 9210549  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 762 - 803
Target Start/End: Original strand, 31247666 - 31247707
Alignment:
Q  762 ttttaccttttgccataaaaataacttatgcaagcttataca 803  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||    
T  31247666 ttttatcttttgctataaaaatagcttatgcaagcttataca 31247707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 593 - 638
Target Start/End: Complemental strand, 47130847 - 47130802
Alignment:
Q  593 gttttcataagctgtcttggagagcctgtgagaataagttgaaaac 638  Q
    ||||||||||||| ||||||||| | ||||| ||||||||||||||    
T  47130847 gttttcataagctatcttggagaacttgtgaaaataagttgaaaac 47130802  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 20170505 - 20170444
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    |||||||||||||| |||||||  |||||||| ||| |||||||| ||||||||||||||||    
T  20170505 ttaacattattttatcttttgcagtaaaaatagcttgtgcaagctgatacataagcgcttat 20170444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 701
Target Start/End: Original strand, 37273142 - 37273250
Alignment:
Q  593 gttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgaca 692  Q
    ||||||||||||| ||||||||| | | ||  ||||||||||||||| ||||| ||||| |  |||| |||| ||||||||| || || ||||||| ||     
T  37273142 gttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcacc 37273241  T
Q  693 agtgcttat 701  Q
    |||||||||    
T  37273242 agtgcttat 37273250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 760 - 812
Target Start/End: Original strand, 18405927 - 18405979
Alignment:
Q  760 tattttaccttttgccataaaaataacttatgcaagcttatacataagcgctt 812  Q
    ||||||| ||||| | ||| |||||||||||| ||||||||||||||||||||    
T  18405927 tattttatcttttcctatataaataacttatgtaagcttatacataagcgctt 18405979  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 629 - 701
Target Start/End: Complemental strand, 20192632 - 20192560
Alignment:
Q  629 agttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgacaagtgcttat 701  Q
    ||||||||||||||||| ||||| |  ||||||||| | ||||||| ||||||||||| | | ||||||||||    
T  20192632 agttgaaaacagcttatggacatgtcataagctgtttctataagctctctcatacagtgtaagaagtgcttat 20192560  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 625 - 685
Target Start/End: Original strand, 34382982 - 34383042
Alignment:
Q  625 aataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacag 685  Q
    |||||| |||||||| |||||||||||||  ||| ||||| ||||||||||||||| ||||    
T  34382982 aataagatgaaaacaacttatagacatatcataatctgtttccataagctatctcaaacag 34383042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 760 - 815
Target Start/End: Original strand, 51929455 - 51929511
Alignment:
Q  760 tattttaccttttgccataaaaataacttatgcaa-gcttatacataagcgcttata 815  Q
    ||||||| ||||||| ||||||||| ||||||||| |||||||||||||| ||||||    
T  51929455 tattttatcttttgctataaaaatatcttatgcaaagcttatacataagcacttata 51929511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 778 - 808
Target Start/End: Complemental strand, 901838 - 901808
Alignment:
Q  778 aaaaataacttatgcaagcttatacataagc 808  Q
    |||||||||||||||||||||||||||||||    
T  901838 aaaaataacttatgcaagcttatacataagc 901808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 1508668 - 1508730
Alignment:
Q  753 ttaacattattttaccttttgccataaaaa-taacttatgcaagcttatacataagcgcttat 814  Q
    |||||| ||||||| |||||||  |||||| ||  ||||||||||||||||||||||||||||    
T  1508668 ttaacaatattttatcttttgctttaaaaaatagtttatgcaagcttatacataagcgcttat 1508730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 760 - 814
Target Start/End: Original strand, 12862342 - 12862396
Alignment:
Q  760 tattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||| ||||||| |||||||||  ||||||||||||| ||||||| ||||||    
T  12862342 tattttatcttttgctataaaaatagattatgcaagcttaaacataagtgcttat 12862396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 5331275 - 5331215
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||  ||||||| |||||| || |||||||||||||||||||||| ||||||    
T  5331275 ttaacgttattttctcttttgctataaaa-tagcttatgcaagcttatacataagtgcttat 5331215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 779 - 812
Target Start/End: Complemental strand, 27822754 - 27822721
Alignment:
Q  779 aaaataacttatgcaagcttatacataagcgctt 812  Q
    |||||||||||||||| |||||||||||||||||    
T  27822754 aaaataacttatgcaaacttatacataagcgctt 27822721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 29520567 - 29520627
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| |||||||  ||||||| |||||| || |||||||||||||||||||||| ||||||    
T  29520567 ttaacgttattttctcttttgctataaaa-tagcttatgcaagcttatacataagtgcttat 29520627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 653
Target Start/End: Original strand, 41452526 - 41452591
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatat 653  Q
    |||| ||||||||||||| || ||||||   ||||  |||||| ||||||||||||||||||||||    
T  41452526 aagctgttttcataagctatcctggagaagttgtggaaataaggtgaaaacagcttatagacatat 41452591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 594 - 643
Target Start/End: Original strand, 4445717 - 4445766
Alignment:
Q  594 ttttcataagctgtcttggagagcctgtgagaataagttgaaaacagctt 643  Q
    ||||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  4445717 ttttcataagctgacttggagagcttgtgaaaataagttgaaaacagctt 4445766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 588 - 645
Target Start/End: Complemental strand, 24915118 - 24915061
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttat 645  Q
    |||| ||||||||||||||||||||||| | ||||| ||||||||||||| |||||||    
T  24915118 aagctgttttcataagctgtcttggagaacttgtgaaaataagttgaaaaaagcttat 24915061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 753 - 811
Target Start/End: Complemental strand, 18556909 - 18556851
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgct 811  Q
    |||||| ||||||| ||||||| ||||||||| ||||| |||||||||||| |||||||    
T  18556909 ttaacaatattttatcttttgcaataaaaatagcttatacaagcttatacacaagcgct 18556851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 753 - 814
Target Start/End: Complemental strand, 42174839 - 42174778
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||| |||| ||||||  ||||||||| | ||||||||||||||||||||| |||||    
T  42174839 ttaacattactttatcttttgatataaaaatagcctatgcaagcttatacataagcccttat 42174778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 626 - 701
Target Start/End: Complemental strand, 32515470 - 32515395
Alignment:
Q  626 ataagttgaaaacagcttatagacatatgttaagctgttcccataagctatctcatacagtctgacaagtgcttat 701  Q
    |||||||||||||| ||||| ||||| |  || |||||| ||||||||| || || ||||||| ||||||||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttat 32515395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 776 - 814
Target Start/End: Original strand, 33541819 - 33541857
Alignment:
Q  776 ataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  33541819 ataaaaatatcttattcaagcttatacataagcgcttat 33541857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 669
Target Start/End: Original strand, 4622096 - 4622177
Alignment:
Q  588 aagcagttttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttatagacatatgttaagctgttcccat 669  Q
    |||| |||| |||| ||| ||||||||||| ||||| |||||| | |||||||||||| ||||| |  |||| |||||||||    
T  4622096 aagctgtttccatatgctatcttggagagcttgtgaaaataagctaaaaacagcttatggacatgtcataagatgttcccat 4622177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 14385851 - 14385912
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||||||||| || ||||||| |||||||||  || ||| ||||||||||||||| |||||    
T  14385851 ttaacattattctatcttttgctataaaaatagtttctgccagcttatacataagctcttat 14385912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 645
Target Start/End: Complemental strand, 31517799 - 31517750
Alignment:
Q  596 ttcataagctgtcttggagagcctgtgagaataagttgaaaacagcttat 645  Q
    ||||||| |||||||||||||| | ||| |||||| ||||||||||||||    
T  31517799 ttcataatctgtcttggagagcttatgaaaataagctgaaaacagcttat 31517750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 753 - 814
Target Start/End: Original strand, 37517282 - 37517343
Alignment:
Q  753 ttaacattattttaccttttgccataaaaataacttatgcaagcttatacataagcgcttat 814  Q
    ||||| ||||||||  |||||  ||| ||||||||||||| ||||||||||||| |||||||    
T  37517282 ttaactttattttatattttggtatagaaataacttatgcgagcttatacataaacgcttat 37517343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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