View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_low_11 (Length: 373)
Name: NF12902_low_11
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 21 - 373
Target Start/End: Complemental strand, 52262773 - 52262421
Alignment:
| Q |
21 |
gagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttttcgagaaatcggatttgtttaagagaattgtga |
120 |
Q |
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| T |
52262773 |
gagtctaaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaataggttttcgagaaatcggatttgtttaagagaattgtga |
52262674 |
T |
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| Q |
121 |
agggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgca |
220 |
Q |
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| T |
52262673 |
agggagatttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgca |
52262574 |
T |
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| Q |
221 |
gcacgcgtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagag |
320 |
Q |
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| T |
52262573 |
gcacgcgtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagag |
52262474 |
T |
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| Q |
321 |
gtgaaaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataa |
373 |
Q |
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| T |
52262473 |
gtgaaaattgaggatttgcctaagattttaggtgcttgttgtgttttgcataa |
52262421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 127 - 373
Target Start/End: Complemental strand, 52251025 - 52250779
Alignment:
| Q |
127 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
226 |
Q |
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| T |
52251025 |
atttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgc |
52250926 |
T |
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| Q |
227 |
gtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaa |
326 |
Q |
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| T |
52250925 |
gtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaag |
52250826 |
T |
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| Q |
327 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataa |
373 |
Q |
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| T |
52250825 |
attgaggagttgcctggtgttcttggtgcttgttgtgttttgcataa |
52250779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 3698843 - 3698909
Alignment:
| Q |
259 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaa |
325 |
Q |
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| T |
3698843 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaa |
3698909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 3702531 - 3702597
Alignment:
| Q |
259 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaa |
325 |
Q |
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| T |
3702531 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaa |
3702597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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