View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12902_low_13 (Length: 301)

Name: NF12902_low_13
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12902_low_13
NF12902_low_13
[»] chr1 (2 HSPs)
chr1 (1-279)||(25493753-25494016)
chr1 (249-279)||(11768923-11768953)
[»] chr7 (4 HSPs)
chr7 (239-279)||(14074477-14074517)
chr7 (239-279)||(14384505-14384545)
chr7 (245-280)||(30406785-30406820)
chr7 (239-280)||(3401067-3401108)
[»] chr8 (2 HSPs)
chr8 (239-278)||(12957551-12957590)
chr8 (244-277)||(13581847-13581880)
[»] chr6 (2 HSPs)
chr6 (239-278)||(8037039-8037078)
chr6 (244-280)||(22727231-22727267)
[»] chr2 (1 HSPs)
chr2 (248-279)||(21503420-21503451)
[»] chr4 (2 HSPs)
chr4 (239-273)||(30797700-30797734)
chr4 (240-277)||(19602969-19603006)
[»] scaffold0107 (1 HSPs)
scaffold0107 (239-279)||(32851-32891)
[»] chr3 (4 HSPs)
chr3 (241-277)||(8713841-8713877)
chr3 (241-277)||(9065728-9065764)
chr3 (239-279)||(13586033-13586073)
chr3 (241-273)||(22487761-22487793)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 25493753 - 25494016
Alignment:
Q  1 ttttcattttctattatattattctcatcactttgatttgatttgtagagaaacagttagtattcgatcttttgtgcattgtatagccttttccctccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25493753 ttttcattttctattatattattctcatcactttgatttgatttgtagagaaacagttagtattcgatcttttgtgcattgtatagccttttccctccat 25493852  T
Q  101 attgtgttttgtcatgcttcaaaagtcttcatccccgtgggtcttctccccttatatccttattaccggaatctcttttatctcctttccatccctcgta 200  Q
    |||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25493853 attgtgttttgtcatgcttcaaaagtcttca---------------tccccttatatccttattaccggaatctcttttatctcctttccatccctcgta 25493937  T
Q  201 tttttatccatcatgatccatttatggacgaaattcaacgtaccaagtaataaagtagtaagtttatcgtctccacatg 279  Q
    |||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||    
T  25493938 tttttatccatcgtgatccatttatggacgaaattcaacgcaacaagtaataaagtagtaagtttatcgtcgccacatg 25494016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 279
Target Start/End: Original strand, 11768923 - 11768953
Alignment:
Q  249 aataaagtagtaagtttatcgtctccacatg 279  Q
    |||||||||||||||||||||||||||||||    
T  11768923 aataaagtagtaagtttatcgtctccacatg 11768953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 14074517 - 14074477
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctccacatg 279  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  14074517 cgtaacaagtaataaagtagtaagtttatcgtcttcacatg 14074477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 14384545 - 14384505
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctccacatg 279  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  14384545 cgtaacaagtaataaagtagtaagtttatcgtcttcacatg 14384505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 280
Target Start/End: Complemental strand, 30406820 - 30406785
Alignment:
Q  245 aagtaataaagtagtaagtttatcgtctccacatga 280  Q
    |||||||||||||||||||| |||||||||||||||    
T  30406820 aagtaataaagtagtaagttaatcgtctccacatga 30406785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Complemental strand, 3401108 - 3401067
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctccacatga 280  Q
    |||| |||||||||||||||||| ||||||||||||| ||||    
T  3401108 cgtaacaagtaataaagtagtaattttatcgtctccatatga 3401067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 12957590 - 12957551
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctccacat 278  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  12957590 cgtaacaagtaataaagtagtaagcttatcgtctccacat 12957551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 13581847 - 13581880
Alignment:
Q  244 caagtaataaagtagtaagtttatcgtctccaca 277  Q
    ||||||||||||||||||||||||||| ||||||    
T  13581847 caagtaataaagtagtaagtttatcgtttccaca 13581880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 8037078 - 8037039
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctccacat 278  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  8037078 cgtaacaagtaataaagtagtaagtttaccgtctccacat 8037039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 22727267 - 22727231
Alignment:
Q  244 caagtaataaagtagtaagtttatcgtctccacatga 280  Q
    |||||||||||||||||| |||||||||| |||||||    
T  22727267 caagtaataaagtagtaaatttatcgtctgcacatga 22727231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 248 - 279
Target Start/End: Original strand, 21503420 - 21503451
Alignment:
Q  248 taataaagtagtaagtttatcgtctccacatg 279  Q
    ||||||||||||||||||||||||||||||||    
T  21503420 taataaagtagtaagtttatcgtctccacatg 21503451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 30797734 - 30797700
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctc 273  Q
    |||| ||||||||||||||||||||||||||||||    
T  30797734 cgtaacaagtaataaagtagtaagtttatcgtctc 30797700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 277
Target Start/End: Complemental strand, 19603006 - 19602969
Alignment:
Q  240 gtaccaagtaataaagtagtaagtttatcgtctccaca 277  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  19603006 gtaccaagtaataaagcagtaagttaatcgtctccaca 19602969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 32891 - 32851
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctccacatg 279  Q
    ||||||||||||||||||||| |||| || |||||||||||    
T  32891 cgtaccaagtaataaagtagttagttaattgtctccacatg 32851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 8713841 - 8713877
Alignment:
Q  241 taccaagtaataaagtagtaagtttatcgtctccaca 277  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  8713841 taccaagtaataaagtagtaagttaatcgtttccaca 8713877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 9065728 - 9065764
Alignment:
Q  241 taccaagtaataaagtagtaagtttatcgtctccaca 277  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  9065728 taccaagtaataaagtagtaagttaatcgtttccaca 9065764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 13586033 - 13586073
Alignment:
Q  239 cgtaccaagtaataaagtagtaagtttatcgtctccacatg 279  Q
    |||| ||| ||||||||||||||||| ||||||||||||||    
T  13586033 cgtatcaaataataaagtagtaagttaatcgtctccacatg 13586073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 273
Target Start/End: Original strand, 22487761 - 22487793
Alignment:
Q  241 taccaagtaataaagtagtaagtttatcgtctc 273  Q
    |||||||||||||||||||||||| ||||||||    
T  22487761 taccaagtaataaagtagtaagttaatcgtctc 22487793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University