View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_low_16 (Length: 243)
Name: NF12902_low_16
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 57 - 234
Target Start/End: Complemental strand, 7899497 - 7899320
Alignment:
| Q |
57 |
cagtagaacacatacaaatatctggaggcaatctcataccaaatatgacaagtaagttacatcttagtgaaggtgggatgagattttgtgagatcttatc |
156 |
Q |
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| T |
7899497 |
cagtagaacacatacaaatatctggaggcaatctcataccaaatatgacaagtaagttacatcttagtgaaggtgggatgagattttgtgagatcttatc |
7899398 |
T |
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| Q |
157 |
cacttgacgtgtaaatgttgtaaacttgtaaaaggttcgttaataatgaaatgggaccccaaatgtttctatattctt |
234 |
Q |
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| T |
7899397 |
cacttgacgtgtaaatgttgtaaacttgtaaaaggttcgttaataatgaaatgggaccccaaatgtttctattttctt |
7899320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7899599 - 7899542
Alignment:
| Q |
1 |
ccttcatttattaaagaaatttgttattttttctccccctttcatccaaaactcttca |
58 |
Q |
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| T |
7899599 |
ccttcatttattaaagaaatttgttattttttctccccctttcatccaaaactcttca |
7899542 |
T |
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