View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12902_low_17 (Length: 240)

Name: NF12902_low_17
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12902_low_17
NF12902_low_17
[»] chr5 (4 HSPs)
chr5 (1-239)||(20708463-20708699)
chr5 (26-216)||(34854427-34854615)
chr5 (35-134)||(11467330-11467429)
chr5 (27-109)||(25950040-25950122)
[»] chr1 (1 HSPs)
chr1 (49-240)||(12083301-12083490)
[»] chr7 (1 HSPs)
chr7 (27-138)||(2242630-2242740)
[»] chr4 (2 HSPs)
chr4 (28-211)||(33571528-33571712)
chr4 (27-121)||(36457553-36457647)
[»] scaffold0007 (1 HSPs)
scaffold0007 (27-175)||(172195-172340)
[»] chr8 (1 HSPs)
chr8 (31-110)||(31287205-31287283)
[»] chr3 (1 HSPs)
chr3 (26-105)||(20407941-20408020)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20708463 - 20708699
Alignment:
Q  1 ttattctagaaatcgttaaataaaacggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatcca 100  Q
    ||||||||||||||||||  ||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||| ||||| |  |||||||||    
T  20708463 ttattctagaaatcgttaggtaagacggagatagattaactccgataaacggtgctttgtttaccccttcttacacgtcccgtcgtagacggagaatcca 20708562  T
Q  101 cctagctagagtaaatcctaagatttccactcaacttatcagtcatctaaacaattatatgagacattaacatatctctgacaaggaatgtccaatttca 200  Q
    |||||||||  ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||    
T  20708563 cctagctaggctaaatcctaagatttacactcaacttatcagtcatctaaacaat--tatgagacattaacatattactgacaaggaatgtccaatttca 20708660  T
Q  201 catcgaattcaccttttgatctaccatcatcttttcatg 239  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  20708661 catcgaattcaccttttgatcaaccatcatcttttcatg 20708699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 216
Target Start/End: Complemental strand, 34854615 - 34854427
Alignment:
Q  26 cggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatt 125  Q
    |||||||||||||||||| ||||| |||| | ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |  | |||||| | |    
T  34854615 cggagatagattaactccgataaatggtgtcccgtttaccccttcttgcacgtcccgtcgtagatagagaatccacctagctagggagagtcctaatact 34854516  T
Q  126 tccactcaacttatcagtcatctaaacaattatatgagacattaacatatctctgacaaggaatgtccaatttcacatcgaattcaccttt 216  Q
     ||||||| |||||||||||||||||||||  ||||||||||| ||||||  |  | ||| ||||||||| ||||||||||||||||||||    
T  34854515 cccactcatcttatcagtcatctaaacaat--tatgagacatttacatattacatataagaaatgtccaaattcacatcgaattcaccttt 34854427  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 11467330 - 11467429
Alignment:
Q  35 attaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatttccactcaa 134  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||| ||||| |  |||||||||||| ||||| |  |||||||| ||| | ||||||    
T  11467330 attaactccgataaacggtgccccgtttaccccttcttacacgtcccgtcgtagacggagaatccacctggctagggcgaatcctaatattcctactcaa 11467429  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 25950040 - 25950122
Alignment:
Q  27 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctag 109  Q
    ||||||||||||||||| |||| | ||| |||||||| |||||||||||| | || ||||| |  | | ||||||||||||||    
T  25950040 ggagatagattaactccgataagcagtgtctcgtttatcccttcttacacattccgtcgtagacggtgtatccacctagctag 25950122  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 12083490 - 12083301
Alignment:
Q  49 acggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatttccactcaacttatcagtcatct 148  Q
    ||||||||  |||||||| ||||||||  ||| |  ||| | |||||||||| ||||||||    |||||||| ||| | ||||||||||| |||| |||    
T  12083490 acggtgccctgtttaccctttcttacatttccaactgtagacagagaatccatctagctaggacgaatcctaatattcctactcaacttatgagtcgtct 12083391  T
Q  149 aaacaattatatgagacattaacatatctctgacaaggaatgtccaatttcacatcgaattcaccttttgatctaccatcatcttttcatgt 240  Q
    || |||||||  |||||||||||||||  | ||||||||||  ||||||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12083390 aaccaattat--gagacattaacatattacggacaaggaatacccaatttcacatcgaattcacctttagatcaaccatcatcatttcatgt 12083301  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 138
Target Start/End: Complemental strand, 2242740 - 2242630
Alignment:
Q  27 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagattt 126  Q
    ||||||||||| ||||| ||||||| |||| |||||| ||||||||||||||||| || || |  |||||||||||||||||| || |||||||| |||     
T  2242740 ggagatagatttactccgataaacgatgcc-cgtttatcccttcttacacgtcccgtcatagacggagaatccacctagctagggtgaatcctaatattc 2242642  T
Q  127 ccactcaactta 138  Q
    ||||||||||||    
T  2242641 ccactcaactta 2242630  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 211
Target Start/End: Complemental strand, 33571712 - 33571528
Alignment:
Q  28 gagatagattaactccaataaacgg--tgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagatt 125  Q
    |||||||||||||||  |||||| |  ||||  |||||||||||||||||||||| |||||| |  ||| |||||||||| |||   |||| |||| |||    
T  33571712 gagatagattaactctgataaacagagtgccctgtttaccccttcttacacgtcctatcgtagacggaggatccacctagttaggacaaatactaatatt 33571613  T
Q  126 tccac-tcaacttatcagtcatctaaacaattatatgagacattaacatatctctgacaaggaatgtccaatttcacatcgaattca 211  Q
     |||| | |||||| || | |||||||||||   |||||||||||||||||| | |||||| |||| | || ||||||| |||||||    
T  33571612 cccacataaacttaccatttatctaaacaat--catgagacattaacatatcgcagacaagaaatggctaagttcacatagaattca 33571528  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 36457647 - 36457553
Alignment:
Q  27 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaa 121  Q
    ||||||||||||||||| |||||| ||||  ||||||||||||||||||| |||| || || || ||||||||| |||  ||| || ||||||||    
T  36457647 ggagatagattaactccgataaacagtgctccgtttaccccttcttacacatcccgtcatagatggagaatccatctaattagggtgaatcctaa 36457553  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 175
Target Start/End: Complemental strand, 172340 - 172195
Alignment:
Q  27 ggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctagagtaaatcctaagattt 126  Q
    ||||||||||||||||| |||||||||| | ||||||||| ||| |||| ||    ||||| |  ||||||| |||| |  || | ||||||||| ||||    
T  172340 ggagatagattaactccgataaacggtgtcccgtttaccctttcctacatgtttagtcgtagacggagaatc-accttgaaagggcaaatcctaatattt 172242  T
Q  127 ccactcaacttatcagtcatctaaacaattatatgagacattaacatat 175  Q
    ||||||||||||||| ||||||||| |||   |||| ||||||||||||    
T  172241 ccactcaacttatcaatcatctaaagaat--catgaaacattaacatat 172195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 31287283 - 31287205
Alignment:
Q  31 atagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctagctaga 110  Q
    |||||||||||   |||||||||||| | |||||||||||||||| ||||| | |||   ||||||||||||||||||||    
T  31287283 atagattaactttgataaacggtgcc-catttaccccttcttacatgtcccgtggtagtaagagaatccacctagctaga 31287205  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 105
Target Start/End: Original strand, 20407941 - 20408020
Alignment:
Q  26 cggagatagattaactccaataaacggtgcctcgtttaccccttcttacacgtcccatcgtaaatagagaatccacctag 105  Q
    |||||||||||||| || |||||||  |  ||| ||||||||||||||||| |||||| ||| || || |||||||||||    
T  20407941 cggagatagattaaatctaataaacaatatctcttttaccccttcttacacttcccattgtagatggaaaatccacctag 20408020  T

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