View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_low_18 (Length: 237)
Name: NF12902_low_18
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 81 - 221
Target Start/End: Original strand, 20709590 - 20709729
Alignment:
| Q |
81 |
ttaaaactacgaacctttaattcattttatcattcactaattaatttagcaaaaaacacacaaactaattaatgcaacaactttactcttaaaatctaac |
180 |
Q |
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| T |
20709590 |
ttaaaactatgaacctttaattcattttatcattcactaatcaatttagcaaaa-acacacaaactaattaatgcaacaactttactctaaaaatctaac |
20709688 |
T |
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| Q |
181 |
atgcataatggaccctttactttcagaaactaattcctaac |
221 |
Q |
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| T |
20709689 |
atgcataatggaccctttactttgagcaactaattcctaac |
20709729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 20709118 - 20709205
Alignment:
| Q |
1 |
tcaggaaattctagttaatccttaaagtttcattttcatatgcatcaagaatcacttcaccacaaatcccaattaagtagttaaaacta |
89 |
Q |
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| T |
20709118 |
tcaggaaattctagttaatccttaaaatttcattttcatatgcatcaagaatcacttcacc-caaagcccaattaagtagttaaaacta |
20709205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 217
Target Start/End: Complemental strand, 12082882 - 12082658
Alignment:
| Q |
6 |
aaattctagttaatccttaaagtttcattttcatatgcatcaagaatcacttcaccacaaatcccaatta-------------agtagttaaaactacga |
92 |
Q |
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| T |
12082882 |
aaattatagttaatccttaaagtttaattttcatatgcaacaagaatcacttcaccacaaaaatcaattactcaaactatttgagtagttaagactataa |
12082783 |
T |
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| Q |
93 |
acctttaattcattttatcattcactaattaatttagcaaaaaacacacaaactaattaatgcaacaacttt-actcttaaaatctaacatgcataatgg |
191 |
Q |
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| T |
12082782 |
aactttaaatcattacatcgttcacaaataaatttaac-caaaatgcaaaaactaattaatgcagcaactttaactcttaaaatctaacatgcgtaataa |
12082684 |
T |
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| Q |
192 |
accctttactttcagaaactaattcc |
217 |
Q |
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| T |
12082683 |
accctttactttcatcaactaattcc |
12082658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 4196182 - 4196246
Alignment:
| Q |
2 |
caggaaattctagttaatccttaaagtttcattttcatatgcatcaagaatcacttcaccacaaa |
66 |
Q |
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| T |
4196182 |
caggaaattttagttaatctattaagtttcttcttcatatgcaacaagaatcacttcaccacaaa |
4196246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 4196270 - 4196393
Alignment:
| Q |
78 |
tagttaaaactacgaacctttaattcattttatcattcac---taattaatttagcaaaaaacacacaaactaattaatgcaacaacttt-actcttaaa |
173 |
Q |
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|||||||||||| || |||||||||||| |||||||||| |||| |||||||| || | |||||| |||| |||||||||| ||| | ||||||| |
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| T |
4196270 |
tagttaaaactatcaaactttaattcattctatcattcacacataatcaatttagc--aagaggcacaaattaatgaatgcaacaattttaattcttaaa |
4196367 |
T |
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| Q |
174 |
atctaacatgcataatggacccttta |
199 |
Q |
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|||||||||||||||| |||||||| |
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| T |
4196368 |
gtctaacatgcataatgaacccttta |
4196393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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