View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_low_7 (Length: 463)
Name: NF12902_low_7
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 167 - 379
Target Start/End: Complemental strand, 4681443 - 4681236
Alignment:
| Q |
167 |
ttgggttatagatccaacctcaaagaggtggatagccttaaccgaggtggtgggttaacaaggaaagcccgaaagctgttcccatccctgtcaggggaga |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4681443 |
ttgggttatagatccaacctcaaagaggtggatagccttaaccgaggtg-tg---taaca-ggaaagcccgaaagctgttcccatccctgtcaggggaga |
4681349 |
T |
|
| Q |
267 |
tgccaaccatctctccttttcacgaacacgtatttgtgatagagaatttagtttataaagactctaacgtttatattattacccgatgtgggactaattt |
366 |
Q |
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||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
4681348 |
tgccaaccatctctccttttcacgaacacatctatgtgctagagaatttagtttataaagactctaacgtttgtgttattacccgatgtgggactaattt |
4681249 |
T |
|
| Q |
367 |
ttcaaaccacctc |
379 |
Q |
| |
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||||||||||||| |
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| T |
4681248 |
ttcaaaccacctc |
4681236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 175 - 396
Target Start/End: Original strand, 4686127 - 4686343
Alignment:
| Q |
175 |
tagatccaacctcaaagaggtggatagccttaaccgaggtggtgggttaacaaggaaagcccgaaagctgttcccatccctgtcaggggagatgccaacc |
274 |
Q |
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||||||||||||||||| |||||||||||||||||||| || || ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4686127 |
tagatccaacctcaaagtggtggatagccttaaccgagatg-tg---taaca-ggaaagcccgaaggctgttcccatccctgtcaggggagatgccaacc |
4686221 |
T |
|
| Q |
275 |
atctctccttttcacgaacacgtatttgtgatagagaatttagtttataaagactctaacgtttatattattacccgatgtgggactaatttttcaaacc |
374 |
Q |
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| T |
4686222 |
atctctccttttcacgaacgcatctatttgctaaagaatttagtttataaagactctaacgtttgtgttattacccgatgtgggactaatttttcaaacc |
4686321 |
T |
|
| Q |
375 |
acctcttcacgtactcaaacac |
396 |
Q |
| |
|
||||||||| ||||| |||||| |
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| T |
4686322 |
acctcttcatgtactgaaacac |
4686343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 312 - 446
Target Start/End: Complemental strand, 4681235 - 4681101
Alignment:
| Q |
312 |
atttagtttataaagactctaacgtttatattattacccgatgtgggactaatttttcaaaccacctcttcacgtactcaaacaccctttattaacaaca |
411 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4681235 |
atttagtttataaagactctaacgtttgtgttattacccgatgtgggactaatttttcaaaccacctcttcacgtactcaaacaccctttattaacaaca |
4681136 |
T |
|
| Q |
412 |
ctactgctattattcatagtttggttggttcatat |
446 |
Q |
| |
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| T |
4681135 |
ctactgctattattcatagtttggttggttcatat |
4681101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 4763767 - 4763890
Alignment:
| Q |
167 |
ttgggttatagatccaacctcaaagaggtggatagccttaaccgaggtggtgggttaacaaggaaagcccgaaagctgttcccatccctgtcaggggaga |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4763767 |
ttgggttatagatccaacctcaaagaggtggatagccttaaccgaggtg-tg---taaca-ggaaagcccgaaagctgttcccatccctgtcaggggaga |
4763861 |
T |
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| Q |
267 |
tgccaaccatctctccttttcacgaacac |
295 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
4763862 |
tgccaaccatctctccttttcacgaacac |
4763890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 4681596 - 4681496
Alignment:
| Q |
17 |
atattttagttcgaataagaaaagggaattccggtaaaatgtttctagcataaaaattgaactctgaattattataattgatactgtactttatacagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
4681596 |
atattttagttcgaataagaaaagggaattccggtaaaatgtttctagcataaaaattgaactctgaattattataattgatcctggactttatacagaa |
4681497 |
T |
|
| Q |
117 |
g |
117 |
Q |
| |
|
| |
|
|
| T |
4681496 |
g |
4681496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 4685753 - 4685813
Alignment:
| Q |
50 |
gtaaaatgtttctagcataaaaattgaactctgaattattataattgatactgtactttat |
110 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
4685753 |
gtaaaatatttctagcacaaaaattgaactctgaattaatataattgatcctgtactttat |
4685813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 4686017 - 4686077
Alignment:
| Q |
50 |
gtaaaatgtttctagcataaaaattgaactctgaattattataattgatactgtactttat |
110 |
Q |
| |
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||||||||||||||| | ||||||| |||||||| ||| ||||||||||| |||||||||| |
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| T |
4686017 |
gtaaaatgtttctagaacaaaaatttaactctgagttaatataattgataatgtactttat |
4686077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 170 - 295
Target Start/End: Complemental strand, 47824436 - 47824312
Alignment:
| Q |
170 |
ggttatagatccaacctcaaagaggtggatagccttaaccgaggtggtgggttaacaaggaaagcccgaaagctgttcccat--ccctgtcaggggagat |
267 |
Q |
| |
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|||| ||||||||||||| | |||||||||||||||||||| |||| || || |||| |||| || ||||||| |||||||| |||||||||||||||| |
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| T |
47824436 |
ggttttagatccaacctcgaggaggtggatagccttaaccggggtg-tgtgt-aaca-ggaatgctcgaaagcagttcccataaccctgtcaggggagat |
47824340 |
T |
|
| Q |
268 |
gccaaccatctctccttttcacgaacac |
295 |
Q |
| |
|
||||| |||||||||||||||||||||| |
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| T |
47824339 |
gccaatcatctctccttttcacgaacac |
47824312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 27009267 - 27009328
Alignment:
| Q |
227 |
aggaaagcccgaaagctgttcccatccctgtcaggggagatgccaaccatctctccttttcacgaa |
292 |
Q |
| |
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||||||||||||| ||||||||| || ||| ||||||||||||| |||||||||||||||||| |
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| T |
27009267 |
aggaaagcccgaaggctgttcccctc----tcacgggagatgccaactatctctccttttcacgaa |
27009328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 2925175 - 2925227
Alignment:
| Q |
227 |
aggaaagcccgaaagctgttcccatccctgtcaggggagatgccaaccatctc |
279 |
Q |
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|||||||| |||||| ||||||||||||| ||| |||||||||||||||||| |
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| T |
2925175 |
aggaaagctcgaaagttgttcccatccctatcaaaggagatgccaaccatctc |
2925227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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