View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_low_8 (Length: 421)
Name: NF12902_low_8
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_low_8 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 929895 - 929746
Alignment:
| Q |
7 |
gtatcaaaggtgggaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcattttgctaggtagaaatcaaattatctttg |
106 |
Q |
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| T |
929895 |
gtatcaaaggtggtaagaaaggtaggaaattctcacatttatcgtgtatggatggatacaatctaatgcatttttctaggtagaaatcaaattatctttg |
929796 |
T |
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| Q |
107 |
aaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
156 |
Q |
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| T |
929795 |
aaggaaactcaatgaatgtaagcggcatagtgtcgcatattaaaatggtt |
929746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 929340 - 929256
Alignment:
| Q |
318 |
tcttattcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
402 |
Q |
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| T |
929340 |
tcttactcggactttctttaatgtttcagaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgttgtg |
929256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 244 - 323
Target Start/End: Complemental strand, 929441 - 929362
Alignment:
| Q |
244 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttatttcatcgtcttactgtttcttat |
323 |
Q |
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| T |
929441 |
tcatgatacatttttcatatcatacaaaaacttcacaaggtcctaattgtgacttatttcatcgtcttactgttttttat |
929362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 345
Target Start/End: Original strand, 1201474 - 1201614
Alignment:
| Q |
203 |
tatttgataaatacattactctggctgcactatatatatattcatgatacatttttcatatcatacaaaaacttcacaaggtccttattgtgacttattt |
302 |
Q |
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| T |
1201474 |
tatttgataaattaattactctggctgaactatatccata------atacatttttcatatcatacaaaaacttcacgaggtcctgattgtgagttattg |
1201567 |
T |
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| Q |
303 |
catcgtcttactgtt----tcttattcggactttctttaatgtttca |
345 |
Q |
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| T |
1201568 |
cattgtcttactgttttaatcttattcagattatctttaatgtttca |
1201614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 346 - 402
Target Start/End: Original strand, 1201640 - 1201696
Alignment:
| Q |
346 |
gaagaccgtctaagttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
402 |
Q |
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| T |
1201640 |
gaagagcgtctaagttctgctgttgtgcccgaatgtttggcttctctccatgttgtg |
1201696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 203
Target Start/End: Complemental strand, 929676 - 929642
Alignment:
| Q |
169 |
ggatggaatcgaggactaaaccgttaaacggttat |
203 |
Q |
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| T |
929676 |
ggatggaatcgaggactaaaccgttaaactgttat |
929642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 24941 - 24981
Alignment:
| Q |
7 |
gtatcaaaggtgggaagaaaggtaggaaattctcacattta |
47 |
Q |
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| T |
24941 |
gtatcaaaggtggtaagaaagataggaaatgctcacattta |
24981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 402
Target Start/End: Complemental strand, 8188573 - 8188529
Alignment:
| Q |
358 |
agttcggctgttgtgcccgaatgtttggcttctctctatgatgtg |
402 |
Q |
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| T |
8188573 |
agttctgctgttgtgcccgattgtttggcttctctccatgttgtg |
8188529 |
T |
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