View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12902_low_9 (Length: 404)
Name: NF12902_low_9
Description: NF12902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12902_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 388
Target Start/End: Original strand, 14247848 - 14248229
Alignment:
| Q |
7 |
gttcttgttgcaattcgagtcactaatgtcatgtttgtttatgggtgtgatagtaagtcttgtgtctcatgtttgcacaacatgaattttctaaagcacc |
106 |
Q |
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| T |
14247848 |
gttcttgttgcaattcgagtcactaatgtcatttttgtttatgggtttgatagtaaatcttgtgtctcatgtttgcacaacatgaattttctaaagcacc |
14247947 |
T |
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| Q |
107 |
aaacagtagtagtgtgacaatgtgtactgatattgttatatttttagtgctcaatgctgagatgagtcttgtggctgggtaggtaggttcacgtcctgta |
206 |
Q |
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| T |
14247948 |
aaacagtagtagtgtgacaatgtgtactgatattgttatatttttagtgctcaatgctgagatgagtcttgtggctggggaggtaggttcacgtcctgta |
14248047 |
T |
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| Q |
207 |
ctaagtgttgcaccccatttgctctgataggctccaaaatgacctttccaaggtcaacgcccttattgggatggagcaagatgaagtctaagataggaac |
306 |
Q |
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| T |
14248048 |
ctaagtgttgcgccccatttgctctgataggctccaaaatgacctttccaaggtcaacgcccttattgggatggagcaagatgaagtctaagataggaac |
14248147 |
T |
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| Q |
307 |
tcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcgtcccaaattctatgttattaagactacttt |
388 |
Q |
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| T |
14248148 |
tcaacatgcttagcagtcatgagcaaatggttgagtaactttcaacccttcgtcccaaattctatgttattaagactacttt |
14248229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 309
Target Start/End: Original strand, 14263349 - 14263398
Alignment:
| Q |
260 |
tcaacgcccttattgggatggagcaagatgaagtctaagataggaactca |
309 |
Q |
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| T |
14263349 |
tcaacgacctaattgggatggagcaacatgaagtctaaactaggaactca |
14263398 |
T |
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