View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12903_high_5 (Length: 440)
Name: NF12903_high_5
Description: NF12903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12903_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 43973822 - 43974239
Alignment:
| Q |
16 |
caaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaaaagttttaggtctgcgcttcatc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973822 |
caaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaaaagttttaggtctgcgcttcatc |
43973921 |
T |
|
| Q |
116 |
ctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttcgatgcgattgcttatgttcatgtgagtgaaaa |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43973922 |
ctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttcgatgcgattgcttatgttcatgtgagtgaaaa |
43974021 |
T |
|
| Q |
216 |
tccttatactttgatgaatgaagcttatagtgctattagggttcatctcaatacttttaggcttttggaagagaaaacacttccaaatttggttgataaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43974022 |
tccttatactttgatgaatgaagcttatagtgctattagggttcatctcaatacttttaggcttttggaagagaaaacacttccaaatttggttgataaa |
43974121 |
T |
|
| Q |
316 |
tttggttggtgtacatgggatgctttctatttaagtgttggtcctattggtgtttttcatggtcttgatgagttttcgaaaagtggtgttgaacctaggt |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
43974122 |
tttggttggtgtacatgggatgctttctatttaagtgttggtcctattggtgtttttcatggtcttgatgagtttttgaaaagcggtgttgaacctaggt |
43974221 |
T |
|
| Q |
416 |
ttgttatcattgatgatg |
433 |
Q |
| |
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|||||||||||||||||| |
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| T |
43974222 |
ttgttatcattgatgatg |
43974239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 43564780 - 43564363
Alignment:
| Q |
16 |
caaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaaaagttttaggtctgcgcttcatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||| || ||| || |
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| T |
43564780 |
caaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctataattgaaaaaggttttaggtcagcactttttc |
43564681 |
T |
|
| Q |
116 |
ctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttcgatgcgattgcttatgttcatgtgagtgaaaa |
215 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||| ||||| | ||| || ||| |||||| |||| ||||||||||||||| | |||||| |
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| T |
43564680 |
ctggttctaatgaccatgttatgatttgtgctgaaagtggttcaaccaaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaa |
43564581 |
T |
|
| Q |
216 |
tccttatactttgatgaatgaagcttatagtgctattagggttcatctcaatacttttaggcttttggaagagaaaacacttccaaatttggttgataaa |
315 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||| |
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|
| T |
43564580 |
tccttatgatttgatgaaagaagcttatagtgttataagggttcatctcaacacttttaggctattggaagagaaaacactaccaaatttagttgataaa |
43564481 |
T |
|
| Q |
316 |
tttggttggtgtacatgggatgctttctatttaagtgttggtcctattggtgtttttcatggtcttgatgagttttcgaaaagtggtgttgaacctaggt |
415 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||| ||| | || |||||||| |||| |
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| T |
43564480 |
tttggttggtgcacttgggatgctttctatttaactgttaatcctattggtgtttttcatggtcttgagggtttttctaaaggcggagttgaaccgaggt |
43564381 |
T |
|
| Q |
416 |
ttgttatcattgatgatg |
433 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
43564380 |
ttgttatcattgatgatg |
43564363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 36432735 - 36432318
Alignment:
| Q |
16 |
caaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaaaagttttaggtctgcgcttcatc |
115 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| |||||||| |||||||||| ||||||||||||| ||||||| |
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| T |
36432735 |
caaatggaaactcaatggattctttttgagattcctgaaatcagatcctatgctgtgatcattcctatcattgaaaacggttttaggtctgcacttcatc |
36432636 |
T |
|
| Q |
116 |
ctggttctgatgaccatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttcgatgcgattgcttatgttcatgtgagtgaaaa |
215 |
Q |
| |
|
||||||||||||||||| | |||||||||||||| ||||| |||||| | |||||||||| ||||||| |||| ||||||||||||||| | |||||| |
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| T |
36432635 |
ctggttctgatgaccattttatgatttgtgctgagagtggttcaacaaaggtgaaagcattgagtttcaatgctattgcttatgttcatttttctgaaaa |
36432536 |
T |
|
| Q |
216 |
tccttatactttgatgaatgaagcttatagtgctattagggttcatctcaatacttttaggcttttggaagagaaaacacttccaaatttggttgataaa |
315 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
36432535 |
tccttatgatttgatgaaagaagcttatagtgctttgagggttcatctcaacacttttaggctactggaagagaaaacacttccaaatttggttgataaa |
36432436 |
T |
|
| Q |
316 |
tttggttggtgtacatgggatgctttctatttaagtgttggtcctattggtgtttttcatggtcttgatgagttttcgaaaagtggtgttgaacctaggt |
415 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||||||| ||||| || || ||| | || ||||| || || | |
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| T |
36432435 |
tttggttggtgtacatgggatgctttttatttgactgtgaatcctattggtgtttttcatggtctcgatgatttctcaaaaggcggcgttgagccaagat |
36432336 |
T |
|
| Q |
416 |
ttgttatcattgatgatg |
433 |
Q |
| |
|
||||| ||||||| |||| |
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|
| T |
36432335 |
ttgttgtcattgacgatg |
36432318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 8952380 - 8952456
Alignment:
| Q |
16 |
caaatggaaactcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctgtcattgaaaa |
92 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
8952380 |
caaatggaaaatcaatggattctcattgatattcctgaaatcaaatcctatgttgttgtcattcctatcaatgaaaa |
8952456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 8952458 - 8952513
Alignment:
| Q |
128 |
accatgtcatgatttgtgctgaaagtgggtcaacacaagtgaaagcatcgagtttc |
183 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||||| ||||||| ||||||| |
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|
| T |
8952458 |
accatgtcatgatttgtgctgaaagtagttcaacacaagtaaaagcattgagtttc |
8952513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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