View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12903_low_1 (Length: 678)
Name: NF12903_low_1
Description: NF12903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12903_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 167 - 662
Target Start/End: Complemental strand, 28670374 - 28669880
Alignment:
| Q |
167 |
atggacacaaatcaagactcgcataaaaacaaacaatcacatcattgctcctacaatggatatacatacacaaaattcacataaacacaactaggggtta |
266 |
Q |
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| T |
28670374 |
atggacacaaatcaaaactcgcataaaaacaaacaatcacatcattgctcctacaatg-atatacatacacaaaattcacataaacacaactaggggtta |
28670276 |
T |
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| Q |
267 |
atatgataccccaaacaagaacactcactttagttgagttcaaagttatcaacactaagagaattgttgagaggtagaggaagtggtgaagttgaaactg |
366 |
Q |
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| T |
28670275 |
atatgataccccaaacaagaacactcactttagttgagttcaaagttatcaacacaaagagaattgttgagaggtagaggaagtggtgaagttgaaactg |
28670176 |
T |
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| Q |
367 |
gtgatatccccttaaaaagccaatatattgcaacaaaaaatccttatcaaataatgaagcacgttgcatgcagcatgcatgactctagtacatgctaaca |
466 |
Q |
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| T |
28670175 |
gtgatatcccctt-aaaagccaatatattgcaacaaaaaatccttatcaaataatgaagcacgtt-------gcatgcatgactctagtacatgctaaca |
28670084 |
T |
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| Q |
467 |
tagcaacaaacaaacaaactattgggaccacaacatacctctttgatgttgcagttcaaaatctcttt-----ataacatacactaacacacaattcaaa |
561 |
Q |
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| T |
28670083 |
tagcaacaaac-aacaaactattgggaccacaacatacctctttgatgttgcagttcaaaatctctttataacataacatacactaacacacaattcaaa |
28669985 |
T |
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| Q |
562 |
acattgaactaaaatggaaaaatcatgttgttacttaaacccactccaaaacaaactttgactagc----attgactactacatgtgattttgtgatcaa |
657 |
Q |
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| T |
28669984 |
acattgaactaaaatggaaaaatcatgttgttacttaaacccactccaaaacaaactttgactagcatatattgactactacatgtgattttgtgatcaa |
28669885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 28670512 - 28670373
Alignment:
| Q |
10 |
acatcatcacaatcataattacttgataaaattctatatgttca------aatacaaatcactcaagaagtcatgaatcatgtttgcacaaaattcattc |
103 |
Q |
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| T |
28670512 |
acatcatcacaatcataattacttgataaaattctatatgttcatgttcaaatacaaatcactcaagaagtcatgaatcatgtttgcacaaaattcattc |
28670413 |
T |
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| Q |
104 |
aactattaccaagacatatacacatacatacacatagtat |
143 |
Q |
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| T |
28670412 |
aactattaccaagacatatacacatacatacacatagtat |
28670373 |
T |
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Back To:
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