View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12903_low_10 (Length: 250)
Name: NF12903_low_10
Description: NF12903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12903_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 48344972 - 48345213
Alignment:
| Q |
9 |
gagaagaatcattgcaaacgatgaagataccttaatcaaatcaaaatcaagagctttgaagatttacaacaatctcaaaaaagtgaagcaacccatttca |
108 |
Q |
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| T |
48344972 |
gagaagaatcattgcaaacgatgaagataccttaatcaaatcaaaatcaagagcgttgaagatttacaacaatctcaaaaaagtgaagcaacccatttca |
48345071 |
T |
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| Q |
109 |
ccaggtggaaaactcacaagttttctcaactctctcttcataaacacaaagaaaacaaaaactgtttcgtcttatgaagactcaaatgcagagaggaaag |
208 |
Q |
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| T |
48345072 |
ccaggtggaaaactcacaagttttctcaactctctcttcataaacacaaagaaaacaaaaactgtttcgtcttatgaagactcaaatgcagagaggaaag |
48345171 |
T |
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| Q |
209 |
gtaaaccaggacaagcttcaacaacttgttcttcagcttctt |
250 |
Q |
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| T |
48345172 |
gtaaaccaggacaagcttcaacaacttgttcttcggcttctt |
48345213 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 3758715 - 3758806
Alignment:
| Q |
52 |
aaatcaagagctttgaagatttacaacaatctcaaaaaagtgaagcaacccatttcaccaggtggaaaactcacaagttttctcaactctct |
143 |
Q |
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| T |
3758715 |
aaatcaagagccgttaagatttacaataacttgaagaaagtgaagcaaccgatttcgccaggtggaaaactcacgagtttcctcaactctct |
3758806 |
T |
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