View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12903_low_5 (Length: 443)
Name: NF12903_low_5
Description: NF12903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12903_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 49 - 426
Target Start/End: Complemental strand, 32090638 - 32090257
Alignment:
| Q |
49 |
aatgatttgtttaattgtggcatggtacattcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgt |
148 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32090638 |
aatgatttgtttaattgtggcgtggtacatgcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgt |
32090539 |
T |
|
| Q |
149 |
ttatccatagcaacattccaaaacccagcaccagatgcaactgtgtaccctttgaagattagagatggagagaaatctgtgatggaggaaccaattactt |
248 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
32090538 |
ttatccatagcaacattccaaaatccagcaccagatgcaactgtgtaccctttgaagattagagatggagagaaatctgtgatggaagaaccaatcactt |
32090439 |
T |
|
| Q |
249 |
ttgctgaaatgtataggaggaagatgagcaaggaccttgagattgctaggatgaagaagctggctaaggaagaaaaagaacttagggacttagagaaggc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32090438 |
ttgctgaaatgtataggaggaagatgagcaaggaccttgagattgctaggatgaagaagctggctaaggaagaaaaagaacttagggacttagagaaggc |
32090339 |
T |
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| Q |
349 |
aaaaattgaagccaagcctttgaatgagattcttgcttaaacttaatctccagat----taataattatttattgttccctc |
426 |
Q |
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| T |
32090338 |
aaaaattgaagccaagcctttgaatgagattcttgcttaaacttaatctccagattaattaataattatttattgttccctc |
32090257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 50 - 392
Target Start/End: Complemental strand, 32067622 - 32067280
Alignment:
| Q |
50 |
atgatttgtttaattgtggcatggtacattcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtt |
149 |
Q |
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| T |
32067622 |
atgatttgtttaattgtggcgtggtacatgcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtt |
32067523 |
T |
|
| Q |
150 |
tatccatagcaacattccaaaacccagcaccagatgcaactgtgtaccctttgaagattagagatggagagaaatctgtgatggaggaaccaattacttt |
249 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
32067522 |
tatccatagcaacattccaaaatccagcaccagatgcaactgtgtaccctttgaagattagagatggagagaaatctgtgatggaagaaccaatcacttt |
32067423 |
T |
|
| Q |
250 |
tgctgaaatgtataggaggaagatgagcaaggaccttgagattgctaggatgaagaagctggctaaggaagaaaaagaacttagggacttagagaaggca |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||||||||| |
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| T |
32067422 |
tgctgaaatgtataggaggaagatgagcaaggaccttgagattgctaggatgaagaagcttggtaaggaagaaaaagaacttaggaacctagagaaggca |
32067323 |
T |
|
| Q |
350 |
aaaattgaagccaagcctttgaatgagattcttgcttaaactt |
392 |
Q |
| |
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||| |||| |||| || |||||||||||||||||||| |||| |
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| T |
32067322 |
aaacttgagcccaaaccattgaatgagattcttgcttagactt |
32067280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 32070563 - 32070439
Alignment:
| Q |
80 |
cagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaa--ctatagccgtttatccatagcaacattccaaaacccagc |
177 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||| ||||| |
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| T |
32070563 |
cagtttctaagtaatggacggttcaaaaatcctgatcaccaagcagtggtaaattccaattctacagctgtttatccatagcaacattccaaaatccagc |
32070464 |
T |
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| Q |
178 |
accagatgcaactgtgtaccctttg |
202 |
Q |
| |
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||||||| ||||||||||||||||| |
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| T |
32070463 |
accagattcaactgtgtaccctttg |
32070439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 387
Target Start/End: Complemental strand, 32070416 - 32070337
Alignment:
| Q |
304 |
gaagctggctaaggaagaaaaagaacttagggacttagagaaggcaaaaattga-agccaagcctttgaatgagattcttgctta |
387 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||||||||| |||| | |||||| |||||||||||||||||||| |
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| T |
32070416 |
gaagctggctaaggaagaaa--gaacttagggacc---agaaggcaaaacttgagaaccaagctattgaatgagattcttgctta |
32070337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 69 - 352
Target Start/End: Complemental strand, 23307624 - 23307341
Alignment:
| Q |
69 |
catggtacattcagtatctaagtaatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtttatccatagcaacattcca |
168 |
Q |
| |
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|||||| ||| |||||| ||||||||||||||||||| || ||||||||| |||||||||||||||| ||| || ||||||||| | ||||||||||| |
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| T |
23307624 |
catggtgcatgcagtatttaagtaatggacggttcaagaaagctgatcacagggcagtggtgaattccagctacagtcgtttatccgttgcaacattcca |
23307525 |
T |
|
| Q |
169 |
aaacccagcaccagatgcaactgtgtaccctttgaagattagagatggagagaaatctgtgatggaggaaccaattacttttgctgaaatgtataggagg |
268 |
Q |
| |
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| | |||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||||||||||||| | |||||| |
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| T |
23307524 |
atatccagcaacagatgcaactgtgtaccctttgaaggttagagagggagagaaatctgtgatggaggaacctctcacttttgctgaaatattcaggagg |
23307425 |
T |
|
| Q |
269 |
aagatgagcaaggaccttgagattgctaggatgaagaagctggctaaggaagaaaaagaacttagggacttagagaaggcaaaa |
352 |
Q |
| |
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|| |||||||| |||||||||| |||||||||||||||| ||| ||| ||||| ||||||||||||||| | ||||||||||| |
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| T |
23307424 |
aatatgagcaatgaccttgagactgctaggatgaagaagatgggtaaagaagataaagaacttagggacatgcagaaggcaaaa |
23307341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 92 - 276
Target Start/End: Original strand, 8625077 - 8625261
Alignment:
| Q |
92 |
aatggacggttcaaaaatgctgatcaccaagcagtggtgaattccaactatagccgtttatccatagcaacattccaaaacccagcaccagatgcaactg |
191 |
Q |
| |
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|||||| ||||||| ||||| |||||||||||||| ||||| | ||| ||| ||||||||| ||||| ||||||||||||||| ||| ||||||||||| |
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| T |
8625077 |
aatggaaggttcaagaatgcagatcaccaagcagtagtgaacccaaaccataaccgtttatcaatagctacattccaaaacccatcacaagatgcaactg |
8625176 |
T |
|
| Q |
192 |
tgtaccctttgaagattagagatggagagaaatctgtgatggaggaaccaattacttttgctgaaatgtataggaggaagatgag |
276 |
Q |
| |
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|||| ||| | ||||||||||| |||||||| || || | || |||||||| || ||||| || |||||||| ||||||||||| |
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|
| T |
8625177 |
tgtatcctctcaagattagagaaggagagaagtcattgctagaagaaccaatcacatttgcagagatgtatagaaggaagatgag |
8625261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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