View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12903_low_9 (Length: 319)
Name: NF12903_low_9
Description: NF12903
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12903_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 45 - 308
Target Start/End: Original strand, 235421 - 235685
Alignment:
| Q |
45 |
tttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
235421 |
tttatcaaccacataaggctggcctttgaaaacacggatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
235520 |
T |
|
| Q |
145 |
actactggttcttctccagtacagttcaatgagccgacaatgataggg-ttttttccatgggacatgacagcgaccacttttttaggattgaagtggctg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
235521 |
actactggttcttctccagtacagttcaacgagccgacaatgatagggtttttttccatgggacatgacagcgaccactattttaggattgaagtggctg |
235620 |
T |
|
| Q |
244 |
acgacatggccatcgagtgaggatggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
308 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
235621 |
acgacatggccatcgggtgaggacggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
235685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 8814204 - 8814023
Alignment:
| Q |
24 |
aacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaa |
123 |
Q |
| |
|
||||||||||||| | |||||||| || ||||||||| ||| ||||||||| |||| || ||||| || ||| | |||||| ||||||||| |||||| |
|
|
| T |
8814204 |
aacagtaacagtctgtccagttttgtctaccacataacactgacctttgaaagcacggatatctccaaagtagactgacatttcaggaataaacttccaa |
8814105 |
T |
|
| Q |
124 |
ttctcatcgccacatttcaacactac---tggttcttctccagtacagttcaatgagccgacaatgatagggttttttccat |
202 |
Q |
| |
|
||||||||||| ||||| |||||||| | |||||||||| ||||||| |||||| |||| |||||||| || ||||||| |
|
|
| T |
8814104 |
ttctcatcgccgcatttgaacactaccagttgttcttctcctttacagttaaatgaggcgacgatgataggtttatttccat |
8814023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 251242 - 251114
Alignment:
| Q |
24 |
aacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaa |
123 |
Q |
| |
|
||||||||| ||||| ||||| || || ||| ||||||| ||||||||||||||| ||||||||| ||||| |||||||| ||| ||| |||||| |
|
|
| T |
251242 |
aacagtaactgtccgtccagtattgtctaccgcataaggtcggcctttgaaaacacaaatgtctccaaaataagccgacatgttaggtatagccttccaa |
251143 |
T |
|
| Q |
124 |
ttctcatcgccacatttcaacactactgg |
152 |
Q |
| |
|
|||||||| || ||||| ||||||||||| |
|
|
| T |
251142 |
ttctcatcaccgcatttgaacactactgg |
251114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 247148 - 247267
Alignment:
| Q |
40 |
ccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatt |
139 |
Q |
| |
|
|||||||| || ||| ||||||| ||||||||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||||| || |||| |
|
|
| T |
247148 |
ccagttttgtctaccgcataaggtcggcctttgaaaacacaaatgtctcctaaataaaccgacatgtgaggtatagccttccaattctcatcaccgcatt |
247247 |
T |
|
| Q |
140 |
tcaacactactggttcttct |
159 |
Q |
| |
|
|||||| | |||||| |||| |
|
|
| T |
247248 |
tcaacaatgctggttgttct |
247267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University