View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12904_high_1 (Length: 818)
Name: NF12904_high_1
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12904_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 755
Target Start/End: Original strand, 4251818 - 4252603
Alignment:
| Q |
1 |
aactattagggagggttgtaatcaaagaagacggcacccaagacattgagcttagctattttgttaaatcgttgtgatactaaggaaataaattgtagta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4251818 |
aactattagggagggttgtaatcaaagaagacggcacccaagacattgagcttagctatcttgttaaatcgttgtgatactaaggaaataaattgtagta |
4251917 |
T |
|
| Q |
101 |
aaatttttgtctttctctcgccgtaggatagtttggttggaaataggtggataaattttcgatgaagtagcaatgttagtttagaatatagttggataat |
200 |
Q |
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| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
4251918 |
acatttgtgtctttctctcaccgtaggatagtttggttggaaataggtggataaattttcgatgaagtagtaatgttagtttagaatatagttggat-at |
4252016 |
T |
|
| Q |
201 |
ataaaagttgatagtttgtagtagaaagtagtgttagacttgggaacaaggagtagattgtattgctctcaaattgaccacttactaggcaaatgttcaa |
300 |
Q |
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||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4252017 |
atagaagttgatagtttgtagtagaaagtagtgtgagacttgggaacaaggagtagattgtattgctctcaaattgaccacttactaggcacatgttcaa |
4252116 |
T |
|
| Q |
301 |
agccaaaaaccgaacagcaaacacgaaaatatgagatttattttattttatccttgatacatcaaac----------------------acgagatttaa |
378 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
4252117 |
agccaaaaaccgaacagcaaacacgaaaatatgagattt-ttttattttatccttgatacatcaaacatgaaatttaagtaggataaatacgagatttaa |
4252215 |
T |
|
| Q |
379 |
gtaggatatgtatatctattttgtcatcctatcattgtaatcaaacaggccctcgattctttgtaaaagaaaatgaaaccctattttttgac-----ata |
473 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
4252216 |
gtaggatatgtatatctattttgtcaccctatcattgtaatcaaacaggccctcgattctttgtaaaagaaaatgaaaccctattttttgacagaataca |
4252315 |
T |
|
| Q |
474 |
atgaaaccttaaact------catcttttaaattattacattacaatggaattgaattttgctaaatttttaccactggattcccttttattcccgaagc |
567 |
Q |
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||||||||||| ||| |||| ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4252316 |
atgaaaccttatactaagttacatcatttaaattattacgctacaatggaatttaattttgctaaatttttacccctggattcccttttattcccgaagc |
4252415 |
T |
|
| Q |
568 |
ctagaatatctctagttgtcaatcgataattaaatggaagaaaagatatatgaaagctcacacaaaacttttatttaattcagcataatagatgcaggat |
667 |
Q |
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||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4252416 |
ctagaatatctctagttttcaatcgataattatatgaaagaaaagatatatgaaagttcacacaaaacttttatttaattcagcataatagatgcaggat |
4252515 |
T |
|
| Q |
668 |
gtaatgctattagttgtactgcatgtacatctgcttgatttcacaactcactataacaaacaaaatagtcaccacttatttttgattt |
755 |
Q |
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| T |
4252516 |
gtaatgctattagttgtactgcatgtacatctgcttgatttcacaactcactataacaaacaaaatagtcaccacttatttttgattt |
4252603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 696 - 750
Target Start/End: Original strand, 4238263 - 4238317
Alignment:
| Q |
696 |
atctgcttgatttcacaactcactataacaaacaaaatagtcaccacttattttt |
750 |
Q |
| |
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| T |
4238263 |
atctgcttgatttcacaactaacaatacgaaacaaaatagtcaccaattattttt |
4238317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 674
Target Start/End: Original strand, 4238172 - 4238228
Alignment:
| Q |
617 |
atgaaagctcacacaaaacttttatttaattcagcataatagatgcaggatgtaatgc |
674 |
Q |
| |
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| T |
4238172 |
atgaaagctcacacaaaacttttctttaattcaccatagtaaatgcagg-tgtaatgc |
4238228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 10042675 - 10042591
Alignment:
| Q |
13 |
gggttgtaatcaaagaagacggcacccaagacattgagcttagctattttgttaaatcgttgtgatactaaggaaataaattgta |
97 |
Q |
| |
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||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
10042675 |
gggttgtaatcaaagaagaggacatccaagacattgagcttagctattttgttaaattgttgagatactaaggaaataaattgta |
10042591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 30477915 - 30477960
Alignment:
| Q |
38 |
ccaagacattgagcttagctattttgttaaatcgttgtgatactaa |
83 |
Q |
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| T |
30477915 |
ccaagacagtgagcttagctactttgttaaatcgtcatgatactaa |
30477960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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