View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12904_high_9 (Length: 329)

Name: NF12904_high_9
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12904_high_9
NF12904_high_9
[»] chr2 (3 HSPs)
chr2 (17-312)||(41441451-41441746)
chr2 (92-299)||(41458308-41458515)
chr2 (139-299)||(41447981-41448141)
[»] chr4 (3 HSPs)
chr4 (202-275)||(23827872-23827945)
chr4 (223-275)||(23818698-23818750)
chr4 (139-263)||(23823884-23824008)
[»] chr7 (1 HSPs)
chr7 (197-269)||(22284148-22284220)


Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 312
Target Start/End: Original strand, 41441451 - 41441746
Alignment:
Q  17 atatatgaacatggatcggtttggcagggttcaattcaaagaactcaaattcagctggaaatgatctgagcagaacaaacagtaaggtttcagctgcatc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41441451 atatatgaacatggatcggtttggcagggttcaattcaaagaactcaaattcagctggaaatgatctgagcagcacaaacagtaaggtttcagctgcatc 41441550  T
Q  117 agtgcctccgactcctcggagcgagggcgagatcttgcagtcatcaaatttaaagagctataccttagctgaacttaagtcggctactagaaattttcga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41441551 agtgcctccgactcctcggagcgagggcgagatcttgcagtcatcaaatttaaagagctataccttagctgaacttaagtcggctactagaaattttcga 41441650  T
Q  217 ccggatagtgtgttaggagaaggtggttttggatcagtttttaagggttggatcgatgagaatacattggttgctgccaaaccgggtactggcata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41441651 ccggatagtgtgttaggagaaggtggttttggatcagtttttaagggttggatcgatgagaatacattggttgctgccaaaccgggtactggcata 41441746  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 299
Target Start/End: Original strand, 41458308 - 41458515
Alignment:
Q  92 caaacagtaaggtttcagctgcatcagtgcctccgactcctcggagcgagggcgagatcttgcagtcatcaaatttaaagagctataccttagctgaact 191  Q
    |||||| ||||||||| |||| |||||||||||||||  |||  || ||||| |||||||||| |||||| | |||||||||||||||||  || |||||    
T  41458308 caaacaataaggtttccgctgtatcagtgcctccgaccgctcaaagtgagggtgagatcttgccgtcatccactttaaagagctatacctatgcagaact 41458407  T
Q  192 taagtcggctactagaaattttcgaccggatagtgtgttaggagaaggtggttttggatcagtttttaagggttggatcgatgagaatacattggttgct 291  Q
       | | || ||| ||||||||   || || | |||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||||   ||||    
T  41458408 ctcgacagccactggaaatttttttccagacaatgtgttaggagaaggtagttttggagcagtttttaagggttggattgatgagaattcattttctgct 41458507  T
Q  292 gccaaacc 299  Q
    ||||||||    
T  41458508 gccaaacc 41458515  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 139 - 299
Target Start/End: Original strand, 41447981 - 41448141
Alignment:
Q  139 gagggcgagatcttgcagtcatcaaatttaaagagctataccttagctgaacttaagtcggctactagaaattttcgaccggatagtgtgttaggagaag 238  Q
    ||||| ||||| ||||||||||| |||||||||||||||||||  || |||||   | | || ||  |||||||||| ||   || ||||||||||||||    
T  41447981 gagggtgagattttgcagtcatccaatttaaagagctatacctatgcagaactgtggacagccaccggaaattttcgtccacgtaatgtgttaggagaag 41448080  T
Q  239 gtggttttggatcagtttttaagggttggatcgatgagaatacattggttgctgccaaacc 299  Q
    ||| |||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||    
T  41448081 gtgatttttgatcagtttttaagggttggattgatgagaattcattggctgctgccaaacc 41448141  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 23827872 - 23827945
Alignment:
Q  202 actagaaattttcgaccggatagtgtgttaggagaaggtggttttggatcagtttttaagggttggatcgatga 275  Q
    ||||||||||||||   ||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  23827872 actagaaattttcgtgtggacagtgtgttaggagatggtgattttggatcagtttttaagggttggattgatga 23827945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 23818698 - 23818750
Alignment:
Q  223 agtgtgttaggagaaggtggttttggatcagtttttaagggttggatcgatga 275  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  23818698 agtgtgttaggagatggtgattttggatcagtttttaagggttggattgatga 23818750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 263
Target Start/End: Original strand, 23823884 - 23824008
Alignment:
Q  139 gagggcgagatcttgcagtcatcaaatttaaagagctataccttagctgaacttaagtcggctactagaaattttcgaccggatagtgtgttaggagaag 238  Q
    ||||| ||||||||||| ||||| ||||| ||||| | ||| ||  | |||||| || | || ||||||||||||||    || | |||||||||||| |    
T  23823884 gagggggagatcttgcaatcatccaatttgaagagttttactttgacagaacttcaggctgcaactagaaattttcgtgtagacattgtgttaggagatg 23823983  T
Q  239 gtggttttggatcagtttttaaggg 263  Q
    | | |||||||||||||||||||||    
T  23823984 gcgattttggatcagtttttaaggg 23824008  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 22284148 - 22284220
Alignment:
Q  197 cggctactagaaattttcgaccggatagtgtgttaggagaaggtggttttggatcagtttttaagggttggat 269  Q
    ||||||| |||||||| || ||||| ||||| || || |||||||||||||| ||||||||||| || |||||    
T  22284148 cggctacgagaaatttccggccggacagtgtcttgggggaaggtggttttggttcagtttttaaaggctggat 22284220  T

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