View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12904_low_10 (Length: 341)
Name: NF12904_low_10
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12904_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 3202759 - 3203071
Alignment:
| Q |
11 |
catcatcaacagcaacatccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcatatggtgccat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202759 |
catcatcaacagcaacatccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcatatggtgccat |
3202858 |
T |
|
| Q |
111 |
gccaattgcagtaccattggcattaccaaagacattagcaccttttacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202859 |
gccaattgcagtaccattggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcg |
3202958 |
T |
|
| Q |
211 |
tatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202959 |
tatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtg |
3203058 |
T |
|
| Q |
311 |
gagaaggcattcc |
323 |
Q |
| |
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||||||||||||| |
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| T |
3203059 |
gagaaggcattcc |
3203071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 3208733 - 3209042
Alignment:
| Q |
11 |
catcatcaacagcaacatccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcatatggtgccat |
110 |
Q |
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|||||||||| ||| ||||||||||||||||||| |||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
3208733 |
catcatcaactgcagcatccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccat |
3208832 |
T |
|
| Q |
111 |
gccaattgcagtaccattggcattaccaaagacattagcaccttttacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcg |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
3208833 |
gccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggctgtgtgagttccatggccaacatcatcg |
3208932 |
T |
|
| Q |
211 |
tatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtg |
310 |
Q |
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|||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208933 |
tatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgcaggtg |
3209032 |
T |
|
| Q |
311 |
gagaaggcat |
320 |
Q |
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| T |
3209033 |
gtgaaggcat |
3209042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 3216677 - 3216993
Alignment:
| Q |
16 |
tcaacagcaacatccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaa |
115 |
Q |
| |
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||||| ||| |||||||||| |||||| | |||| |||| ||||||| | || |||||||||||| |||||||||||||||| |||||||||||| |
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| T |
3216677 |
tcaactgcagcatccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctg |
3216776 |
T |
|
| Q |
116 |
ttgcagtaccattggcattaccaaagacattagcaccttttacgggccttccagcggccgtgctggccgtgtgagttccgtggccaacataatcgtatgg |
215 |
Q |
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|||| ||||| || || || || |||||||| || || | ||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
3216777 |
ttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggccaacatcatcgaatgg |
3216876 |
T |
|
| Q |
216 |
aagggatgaattt---------acgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttgca |
306 |
Q |
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||| ||| ||||| |||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
3216877 |
aagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccattccattttgca |
3216976 |
T |
|
| Q |
307 |
ggtggagaaggcattcc |
323 |
Q |
| |
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|||||||| |||||||| |
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| T |
3216977 |
ggtggagagggcattcc |
3216993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 3232106 - 3232153
Alignment:
| Q |
277 |
gtgaattcacaatggccattccattttgcaggtggagaaggcattcct |
324 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtggtggcggcattcct |
3232153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 3177934 - 3177888
Alignment:
| Q |
278 |
tgaattcacaatggccattccattttgcaggtggagaaggcattcct |
324 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattcct |
3177888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Original strand, 3240906 - 3240952
Alignment:
| Q |
278 |
tgaattcacaatggccattccattttgcaggtggagaaggcattcct |
324 |
Q |
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|||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtggcggcggcattcct |
3240952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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