View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12904_low_18 (Length: 235)

Name: NF12904_low_18
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12904_low_18
NF12904_low_18
[»] chr2 (3 HSPs)
chr2 (132-230)||(3769297-3769395)
chr2 (132-171)||(24437928-24437968)
chr2 (132-176)||(44944079-44944123)
[»] chr1 (4 HSPs)
chr1 (132-230)||(3928295-3928393)
chr1 (137-207)||(23347009-23347079)
chr1 (139-205)||(51184524-51184589)
chr1 (137-207)||(15248879-15248949)
[»] chr6 (1 HSPs)
chr6 (132-230)||(30373042-30373140)
[»] chr5 (4 HSPs)
chr5 (2-97)||(3938545-3938643)
chr5 (143-209)||(16914271-16914337)
chr5 (142-203)||(39933551-39933612)
chr5 (132-176)||(22967188-22967232)
[»] chr4 (2 HSPs)
chr4 (132-223)||(6353652-6353743)
chr4 (151-211)||(56532714-56532774)
[»] chr3 (5 HSPs)
chr3 (137-220)||(36501593-36501676)
chr3 (137-195)||(36496981-36497040)
chr3 (137-209)||(29429926-29429998)
chr3 (132-171)||(35420348-35420388)
chr3 (137-177)||(35653124-35653164)
[»] scaffold0025 (1 HSPs)
scaffold0025 (151-211)||(150368-150428)
[»] chr8 (1 HSPs)
chr8 (159-199)||(32318075-32318115)
[»] chr7 (3 HSPs)
chr7 (132-176)||(3772599-3772643)
chr7 (151-211)||(13784876-13784936)
chr7 (151-211)||(23902775-23902835)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 3769395 - 3769297
Alignment:
Q  132 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3769395 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtg 3769297  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 24437968 - 24437928
Alignment:
Q  132 gcatttcaagtgagaggg-tttttattgtgagagatgagag 171  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  24437968 gcatatcaagtgagagggctttttattgtgagagatgagag 24437928  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 44944123 - 44944079
Alignment:
Q  132 gcatttcaagtgagagggtttttattgtgagagatgagagtgtta 176  Q
    |||| |||||||||| | |||||||||||||||||||||| ||||    
T  44944123 gcatatcaagtgagatgttttttattgtgagagatgagagggtta 44944079  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 3928295 - 3928393
Alignment:
Q  132 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtg 230  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3928295 gcatttcaagtaagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttttgtg 3928393  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 23347009 - 23347079
Alignment:
Q  137 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggtt 207  Q
    |||||||||||  |||||||| | ||||||||||| ||||| ||| |||||||| |||||| |||||||||    
T  23347009 tcaagtgagagattttttattataagagatgagagggttaaattataacccttgaatcaatattaacggtt 23347079  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 205
Target Start/End: Original strand, 51184524 - 51184589
Alignment:
Q  139 aagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacgg 205  Q
    |||||||||| |||||||||||||||||||||| ||||| ||| |||| ||||||| |||| |||||    
T  51184524 aagtgagagg-tttttattgtgagagatgagagggttaaattataacctttggatcgatctcaacgg 51184589  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 15248879 - 15248949
Alignment:
Q  137 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggtt 207  Q
    ||||||||||||| |||||  |||||||||||||| ||||| | | ||||||||||| ||| |||| ||||    
T  15248879 tcaagtgagagggcttttacagtgagagatgagagggttaaatcataacccttggattaatattaatggtt 15248949  T

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Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 30373140 - 30373042
Alignment:
Q  132 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtg 230  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30373140 gcatttcaagtgagagggtttttattatgagagatgagagtgttaaattacaacccttggatcaatcttaacggttcaaaatgaaactttacttatgtg 30373042  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 3938643 - 3938545
Alignment:
Q  2 cggagtctggcaatgtgctgattat---gtccatattcggagtaggggaggacatttcaagtgagaaagagaatcaaataatgtatttgtgataatcac 97  Q
    |||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3938643 cggagtctggcaatgtgctgattattatgtccacattcggagtaggggaggacatttcaagtgagaaagagaatcaaataatgtatttgtgataatcac 3938545  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 16914337 - 16914271
Alignment:
Q  143 gagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttca 209  Q
    ||||||||||||||||||||||||||||| ||||  ||| |||| || |||||||||||| ||||||    
T  16914337 gagagggtttttattgtgagagatgagagagttatattataaccattagatcaatcttaaaggttca 16914271  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 39933612 - 39933551
Alignment:
Q  142 tgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaac 203  Q
    |||||| |||||||||||||||||| |||| ||||| | | |||||||||||||||| ||||    
T  39933612 tgagagtgtttttattgtgagagataagagggttaaatcataacccttggatcaatcataac 39933551  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 22967232 - 22967188
Alignment:
Q  132 gcatttcaagtgagagggtttttattgtgagagatgagagtgtta 176  Q
    |||| |||||||||||| |||||||||||||||||||||| ||||    
T  22967232 gcatatcaagtgagaggttttttattgtgagagatgagagggtta 22967188  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 132 - 223
Target Start/End: Original strand, 6353652 - 6353743
Alignment:
Q  132 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttac 223  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6353652 gcatttcaagtgagagggttttcattatgagagatgagagtgttaagttataacccttggatcaatcttaacggttcaaaatgaaactttac 6353743  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 56532714 - 56532774
Alignment:
Q  151 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 211  Q
    |||||||||  |||||||||| ||||| |||||||| ||| | ||||||||||||||||||    
T  56532714 ttttattgtatgagatgagagggttaaattacaaccattgaaccaatcttaacggttcaaa 56532774  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 220
Target Start/End: Complemental strand, 36501676 - 36501593
Alignment:
Q  137 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactt 220  Q
    ||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||| |||||||||    
T  36501676 tcaagcgagagggtttttattgtgagagatgagaggattaagtcacaacccttggatcaatcttaactgttcaagatgaaactt 36501593  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 195
Target Start/End: Original strand, 36496981 - 36497040
Alignment:
Q  137 tcaagtgagag-ggtttttattgtgagagatgagagtgttaagttacaacccttggatca 195  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  36496981 tcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatca 36497040  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 29429926 - 29429998
Alignment:
Q  137 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttca 209  Q
    |||| ||||||||||||||||||||||| ||||||   |||  || |||| || |||||||||||| ||||||    
T  29429926 tcaaatgagagggtttttattgtgagaggtgagaggactaaactataaccattagatcaatcttaatggttca 29429998  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 171
Target Start/End: Complemental strand, 35420388 - 35420348
Alignment:
Q  132 gcatttcaagtgagaggg-tttttattgtgagagatgagag 171  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  35420388 gcatatcaagtgagagggctttttattgtgagagatgagag 35420348  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 35653124 - 35653164
Alignment:
Q  137 tcaagtgagagggtttttattgtgagagatgagagtgttaa 177  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  35653124 tcaagtgagaggagttttattgtgagagatgagagggttaa 35653164  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 150368 - 150428
Alignment:
Q  151 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 211  Q
    ||||||||||||||||||||| |||||   | ||||||| |||||||||||||||||||||    
T  150368 ttttattgtgagagatgagagggttaaaccataacccttcgatcaatcttaacggttcaaa 150428  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 32318075 - 32318115
Alignment:
Q  159 tgagagatgagagtgttaagttacaacccttggatcaatct 199  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  32318075 tgagagatgagagggttaaattacaacccttggatcaatct 32318115  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 3772599 - 3772643
Alignment:
Q  132 gcatttcaagtgagagggtttttattgtgagagatgagagtgtta 176  Q
    |||| |||| ||||||| |||||||||||||||||||||| ||||    
T  3772599 gcatatcaaatgagaggttttttattgtgagagatgagagggtta 3772643  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 13784936 - 13784876
Alignment:
Q  151 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 211  Q
    |||||||||||||||||||||  ||||   | |||| |||||||||| |||||||||||||    
T  13784936 ttttattgtgagagatgagaggattaaaccataacctttggatcaattttaacggttcaaa 13784876  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 23902775 - 23902835
Alignment:
Q  151 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 211  Q
    |||||||||||||||||||||  ||||   | |||| |||||||||| |||||||||||||    
T  23902775 ttttattgtgagagatgagaggattaaaccataacctttggatcaattttaacggttcaaa 23902835  T

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