View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12904_low_2 (Length: 685)
Name: NF12904_low_2
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12904_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 679
Target Start/End: Complemental strand, 9905216 - 9904536
Alignment:
| Q |
1 |
cctgaactctagtgagtgaacaccaaaacgttagtcaccaacacaagtactaacaacctcctaaatcagctcctaaatataatcaatcgccaattaagca |
100 |
Q |
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| T |
9905216 |
cctgaactctagtgagtgaacaccaaaacgttagtcaccaacacaaatactaacaacctcctaaatcagctcctaaatataatcaatcgccaattaagca |
9905117 |
T |
|
| Q |
101 |
cttgcaccattatgataattacatactatgacatcgccagaaatacaacaaggattcctcaactcccacataatagctaacggacttacgaagaacatga |
200 |
Q |
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| T |
9905116 |
cctgcaccattatgataattacatactatgacatcgccagaaatacaacaaggattcctcaactcacacataacagctaacggacttacgaagaacatga |
9905017 |
T |
|
| Q |
201 |
aaaaacaactaacgggcttacgaagaacatgaaagatcacacattcttcaactgccgccagtcggacatggatattgagatacaacgaggactatttgac |
300 |
Q |
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| T |
9905016 |
aaaaacaactaacgggcttacgaagaacatgaaagaacacacattcttcaactgccgccagtcgaacatggatattgagatacaacgaggacgattcgac |
9904917 |
T |
|
| Q |
301 |
aacacttacaaaaacatgactcgacggcacgtgcctttcacactaatacaacaccaaaacttaatccttgatacataccgttaaattaacgaactgtttt |
400 |
Q |
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| T |
9904916 |
gacacttacaaaaacatgactcgacggcacgtgtctttcacactaatacaacaccaaaacttaatccttgatacataccgttaaattaacgaactgtttt |
9904817 |
T |
|
| Q |
401 |
aagcttcacatcaccatatctcccatacattccctcgaatttatgcaccattgattaatgttataatctatct-aggtctttgatttaaactgcatccaa |
499 |
Q |
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| T |
9904816 |
aagcttcacatcaccatatctcccatacatgccctcgaatttatgcaccattgattaatgttataatctatctaaggtctttgatttaaactgcatccaa |
9904717 |
T |
|
| Q |
500 |
tccaattccaagagaatatcttcacatcctccatcattttttcattgcttactcttttattatggaaacagttatcgttccctactttccaaataccggc |
599 |
Q |
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| T |
9904716 |
tccaattccaagagaatatcttcacatcctccatcattttttcattgcttactcttttattatggaaacagttatcgttccctgctttccaaataccggc |
9904617 |
T |
|
| Q |
600 |
aaattaaatcacacttatgcacgttgagattgctttttcgttgc-tagcaagcctccgaactgctcaagatgatgatgtcc |
679 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
9904616 |
aaatcaaatcacacttatgcacgttgagattgctttttcgttgcttagcaagcctccgaactactcaagatgaagatgtcc |
9904536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 595
Target Start/End: Original strand, 23702213 - 23702362
Alignment:
| Q |
439 |
atttatgcaccattgattaatgttataatctatctaggtctttgatttaaactgcatccaatccaattccaagagaatatcttcacatcctccatc-att |
537 |
Q |
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| T |
23702213 |
atttaagcaccattgattgatgttataatcta---aggactttgatttaaacctcatccagt-----tccaagagaatagcttcacatcctccatcaact |
23702304 |
T |
|
| Q |
538 |
ttttcattgcttactcttttattatggaaacagttatcgttccctactttccaaatac |
595 |
Q |
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| T |
23702305 |
tattcagtgctcactcctttattatgaaaacatttatcgttccttgccttccaaatac |
23702362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 23701934 - 23702017
Alignment:
| Q |
203 |
aaacaactaacgggcttacgaagaacatgaaagatcacacattcttcaactgccgccagtcggacatggatattgagatacaac |
286 |
Q |
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| T |
23701934 |
aaacaactaacacgcttacaaagaacatgaaaaaacacacattcttcatccgcaaccagccggacaaggatctagagatacaac |
23702017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 12423410 - 12423470
Alignment:
| Q |
14 |
gagtgaacaccaaaacgttagtcaccaacacaagtactaacaacctcctaaatcagctcct |
74 |
Q |
| |
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| T |
12423410 |
gagtgaacaccaaaacattagccaccaacacaaaaactaacaacctcttaaatcaactcct |
12423470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 32669286 - 32669204
Alignment:
| Q |
203 |
aaacaactaacgggcttacgaagaacatgaaagatcacacattcttcaactgccgccagtcggacatggatattgagatacaac |
286 |
Q |
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| T |
32669286 |
aaacaactaaccggcttatgaagaaaatgaaaaa-cacacaatcttcaaccgcagtcagccggacagggatattgagatacaac |
32669204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 32669018 - 32668982
Alignment:
| Q |
420 |
ctcccatacattccctcgaatttatgcaccattgatt |
456 |
Q |
| |
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||||||||||| |||||| |||||||||||||||||| |
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| T |
32669018 |
ctcccatacataccctcggatttatgcaccattgatt |
32668982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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