View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12904_low_3 (Length: 554)

Name: NF12904_low_3
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12904_low_3
NF12904_low_3
[»] chr7 (9 HSPs)
chr7 (18-544)||(42172135-42172661)
chr7 (419-539)||(42154490-42154610)
chr7 (418-509)||(42142690-42142781)
chr7 (289-381)||(7602822-7602913)
chr7 (77-161)||(42142540-42142626)
chr7 (79-158)||(42154347-42154428)
chr7 (286-381)||(34252989-34253084)
chr7 (282-344)||(32548896-32548958)
chr7 (286-378)||(31221600-31221692)
[»] chr8 (6 HSPs)
chr8 (210-381)||(6863032-6863203)
chr8 (295-376)||(41211559-41211640)
chr8 (204-344)||(34018198-34018337)
chr8 (325-380)||(34856496-34856551)
chr8 (306-378)||(34780298-34780368)
chr8 (284-320)||(14526545-14526581)
[»] chr3 (4 HSPs)
chr3 (269-381)||(42347361-42347473)
chr3 (296-378)||(35052544-35052626)
chr3 (225-255)||(49995049-49995079)
chr3 (285-338)||(5314796-5314849)
[»] chr6 (2 HSPs)
chr6 (293-343)||(2572341-2572391)
chr6 (297-343)||(3951692-3951738)
[»] chr5 (4 HSPs)
chr5 (286-367)||(21135918-21135999)
chr5 (204-381)||(33155525-33155701)
chr5 (204-381)||(3769802-3769973)
chr5 (320-375)||(38676406-38676461)
[»] chr2 (2 HSPs)
chr2 (286-378)||(4522253-4522345)
chr2 (259-312)||(43931737-43931790)
[»] chr4 (2 HSPs)
chr4 (282-344)||(39734506-39734568)
chr4 (294-378)||(43405204-43405288)
[»] chr1 (3 HSPs)
chr1 (295-379)||(3006324-3006408)
chr1 (338-374)||(3429931-3429967)
chr1 (269-329)||(27925340-27925400)


Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 18 - 544
Target Start/End: Original strand, 42172135 - 42172661
Alignment:
Q  18 ataggtcatatattcagtgaaatctgaaaactccaatagttttgataaacatataatataagaacatatttacatgatctaattgaaaaacaagaaaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42172135 ataggtcatatattcagtgaaatctgaaaactccaatagttttgataaacatataatataagaacatatttacatgatctaattgaaaaacaagaaaatt 42172234  T
Q  118 catatttatcacacccacaaatgctaagctcccaatgagttcaatggtaggtgtccatagttggtgaagttacatactacaggccgttctaaggtgcata 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42172235 catatttatcacacccacaaatgctaagcttccaatgagttcaatggtaggtgtccatagtcggtgaagttacatactacaggccgttctaaggtgcata 42172334  T
Q  218 attgaaccaagtcttgcatcatgcacaaattagttttttcccattagattgataaatctcatcgttaaatcaaataagatatgatgtgacttattaatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42172335 attgaaccaagtcttgcatcatgcacaaattagttttttcccattagattgataaatctcatcgttaaatcaaataagatatgatgtgatttattaatct 42172434  T
Q  318 aatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagccacatagtacaataacagaataattatctgcttaaag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42172435 aatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagccacatagtacaataacagaataattatctgcttaaag 42172534  T
Q  418 ttgagtgacttactgctggcatgtctatgtagtagctaatatgattgaatgccattgaaagcggttgaaacggtagaaccattcctcttctcaattcata 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||     
T  42172535 ttgagtgacttactgctggcatgtctatgtagtagctaatatgattgaatgctattgaaagcggttgaaacggtagaaccattcctcttctcaattcatg 42172634  T
Q  518 gttagatgaactggtaatttctgatga 544  Q
    |||||||||||||||||||||||||||    
T  42172635 gttagatgaactggtaatttctgatga 42172661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 419 - 539
Target Start/End: Original strand, 42154490 - 42154610
Alignment:
Q  419 tgagtgacttactgctggcatgtctatgtagtagctaatatgattgaatgccattgaaagcggttgaaacggtagaaccattcctcttctcaattcatag 518  Q
    ||||| |||||| |||||||||||||  |||||||||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||  ||||| |    
T  42154490 tgagtaacttacggctggcatgtctacatagtagctaatatggttgaatgtcatcgaaagaggttgaaacggtagaaccattcctcttctcggttcatgg 42154589  T
Q  519 ttagatgaactggtaatttct 539  Q
    || ||||||||  ||||||||    
T  42154590 ttcgatgaactcataatttct 42154610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 509
Target Start/End: Original strand, 42142690 - 42142781
Alignment:
Q  418 ttgagtgacttactgctggcatgtctatgtagtagctaatatgattgaatgccattgaaagcggttgaaacggtagaaccattcctcttctc 509  Q
    |||||| ||||||  |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||    
T  42142690 ttgagtaacttacgtctggcatgtctacgtagtagctaatatgattgaattccattgaaagaggttgaaacggtagcaccattcctcttctc 42142781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 289 - 381
Target Start/End: Complemental strand, 7602913 - 7602822
Alignment:
Q  289 aaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagcc 381  Q
    |||| ||||||||||||| ||||| ||| ||| || ||||| ||| |||||||||| ||||||  ||||||||||||||| ||||||||||||    
T  7602913 aaatgagatatgatgtga-ttattgatccaatagtgaaaaagacatttgtgcatggtgcaaaaccattttacttgtgcatgttagacaaagcc 7602822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Original strand, 42142540 - 42142626
Alignment:
Q  77 aagaacatatttacatgatctaattgaaaaacaagaaaa-ttcatatttatc-acacccacaaatgctaagctcccaatgagttcaa 161  Q
    |||||||||||||||||||| || ||||| ||| ||||| ||||| | |||  |||| ||||||||||||||||| |||||||||||    
T  42142540 aagaacatatttacatgatccaagtgaaagacaggaaaacttcatttatatatacactcacaaatgctaagctcctaatgagttcaa 42142626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 42154347 - 42154428
Alignment:
Q  79 gaacatatttacatgatctaattgaaaaacaag-aaaattcatatttat-cacacccacaaatgctaagctcccaatgagtt 158  Q
    |||||||||||||||||| || ||||||||||| ||||||||| | |||  |||| ||||||||||||||||| ||| ||||    
T  42154347 gaacatatttacatgatccaagtgaaaaacaagaaaaattcatttatatatacactcacaaatgctaagctcctaataagtt 42154428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 381
Target Start/End: Complemental strand, 34253084 - 34252989
Alignment:
Q  286 atcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagcc 381  Q
    |||||||  |||||| ||||||||||| | |||||| || ||||||  ||||||||||| |||| | || | || ||||||| |||||||||||||    
T  34253084 atcaaatgtgatatgttgtgacttattgacctaatgctagaaaacaatcttgtgcatggtgcaagactaatatatttgtgcacattagacaaagcc 34252989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 32548958 - 32548896
Alignment:
Q  282 ttaaatcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatgg 344  Q
    ||||||||||||||||||| | | | ||||||||| |||| ||||||| ||||||||| ||||    
T  32548958 ttaaatcaaataagatatgttataatttattaatccaatgttaaaaaagacacttgtgtatgg 32548896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 286 - 378
Target Start/End: Complemental strand, 31221692 - 31221600
Alignment:
Q  286 atcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaa 378  Q
    ||||||| | || |||||||||||||| ||| |||| | ||||| ||| |||| ||||  |||| |  ||||||| |||||||||||||||||    
T  31221692 atcaaatgaaatttgatgtgacttattgatcaaatgatgaaaaatacagttgtacatgttgcaagaccattttacctgtgcatattagacaaa 31221600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 6863032 - 6863203
Alignment:
Q  210 ggtgcataattgaaccaagtcttgcatcatgcacaaattagttttttcccattagattgataaatctcatcgttaaatcaaataagatatgatgtgactt 309  Q
    ||||||||| |||  ||||||||||||||| |||||  ||||||   || ||| |||  |||||||||| | |||||| |||| | ||||||||||||||    
T  6863032 ggtgcataagtgagacaagtcttgcatcatacacaagctagtttccacc-attggatcaataaatctcaccattaaattaaatgaaatatgatgtgactt 6863130  T
Q  310 atta-atctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagcc 381  Q
     ||  ||||||||||  ||||  ||||||||||||| |||| |  ||||| ||||||||| ||||||||||||    
T  6863131 tttttatctaatggtggaaaaggcacttgtgcatggtgcaagaccattttgcttgtgcatgttagacaaagcc 6863203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 41211559 - 41211640
Alignment:
Q  295 gatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagaca 376  Q
    |||||||||||||||||| ||||||| ||||||||   || |||| |||| |||| | || |||||||||||| ||||||||    
T  41211559 gatatgatgtgacttattgatctaatagtaaaaaatgaacatgtgtatggtgcaagactaatttacttgtgcacattagaca 41211640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 344
Target Start/End: Complemental strand, 34018337 - 34018198
Alignment:
Q  204 ttctaaggtgcataattgaaccaagtcttgcatcatgcacaaattagttttttcccattagattgataaatctcatcgttaaatcaaataagatatgatg 303  Q
    ||||||||||||||| |||  |||||||||||||||||||||  ||| ||||| ||||| |||  ||||||  || | |||||| |||| ||| |||||     
T  34018337 ttctaaggtgcataagtgagacaagtcttgcatcatgcacaagctag-tttttaccattggatcaataaattccaccattaaattaaatgagaaatgatt 34018239  T
Q  304 tgacttattaatctaatggtaaaaaacacacttgtgcatgg 344  Q
    |||||| || |||  ||||| |||||   ||||||||||||    
T  34018238 tgactttttgatccgatggtgaaaaagttacttgtgcatgg 34018198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 34856496 - 34856551
Alignment:
Q  325 aaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagc 380  Q
    ||||| |||||||||||||| |||| | |||||| ||||||||| |||||||||||    
T  34856496 aaaaagacacttgtgcatggtgcaagactattttgcttgtgcatgttagacaaagc 34856551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 34780368 - 34780298
Alignment:
Q  306 acttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaa 378  Q
    ||||||||||| |||||||||||  | | |||||||||| |||| | |||||||||| |||| ||||||||||    
T  34780368 acttattaatccaatggtaaaaa--aaaattgtgcatggtgcaagactattttacttatgcacattagacaaa 34780298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 320
Target Start/End: Original strand, 14526545 - 14526581
Alignment:
Q  284 aaatcaaataagatatgatgtgacttattaatctaat 320  Q
    |||| |||| |||||||||||||||||||||||||||    
T  14526545 aaattaaatgagatatgatgtgacttattaatctaat 14526581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 381
Target Start/End: Original strand, 42347361 - 42347473
Alignment:
Q  269 ataaatctcatcgttaaatcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcat 368  Q
    |||||||||||| |||||| | || |||||||||| |||||||||||| |||||| ||||  |||||| | ||||| |||| |  ||||| ||||||||     
T  42347361 ataaatctcatcattaaattatatgagatatgatgcgacttattaatccaatggtgaaaaggacacttattcatggtgcaagaccattttgcttgtgcaa 42347460  T
Q  369 attagacaaagcc 381  Q
     ||||||||||||    
T  42347461 tttagacaaagcc 42347473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 35052544 - 35052626
Alignment:
Q  296 atatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaa 378  Q
    |||||||||||||| || ||| ||||||  |||| |||||||||||||  |||| || ||||| ||||||||| |||||||||    
T  35052544 atatgatgtgactttttgatccaatggtggaaaagacacttgtgcatgatgcaatatcattttgcttgtgcatgttagacaaa 35052626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 49995079 - 49995049
Alignment:
Q  225 caagtcttgcatcatgcacaaattagttttt 255  Q
    |||||||||||||||||||||||||||||||    
T  49995079 caagtcttgcatcatgcacaaattagttttt 49995049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 338
Target Start/End: Original strand, 5314796 - 5314849
Alignment:
Q  285 aatcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgt 338  Q
    |||||||| ||||||||||||||||||| ||| |||  ||||| ||||||||||    
T  5314796 aatcaaatgagatatgatgtgacttattgatccaattataaaagacacacttgt 5314849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 2572341 - 2572391
Alignment:
Q  293 aagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatg 343  Q
    ||||| |||||||||||||| |||||||||||||||| |||||||||||||    
T  2572341 aagatgtgatgtgacttattgatctaatggtaaaaaaaacacttgtgcatg 2572391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 3951738 - 3951692
Alignment:
Q  297 tatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatg 343  Q
    ||||||| |||||||| |||||||||||||||| | |||||||||||    
T  3951738 tatgatgcgacttattgatctaatggtaaaaaagatacttgtgcatg 3951692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 367
Target Start/End: Original strand, 21135918 - 21135999
Alignment:
Q  286 atcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgca 367  Q
    |||||||||||||||||| || |||||||||||||| | |||| |||| |||||||||| | || || ||||||||| ||||    
T  21135918 atcaaataagatatgatgagatttattaatctaatgtttaaaagcacatttgtgcatggtgtaagatcattttacttatgca 21135999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 381
Target Start/End: Complemental strand, 33155701 - 33155525
Alignment:
Q  204 ttctaaggtgcataattgaaccaagtcttgcatcatgcacaaattagttttttcccattagattgataaatctcatcgttaaatcaaataagatatgatg 303  Q
    |||||||||||| || |||  |||||||||||||||||||||  ||| ||||  ||||| |||  ||||||| || | |||||| |||| ||| |||||     
T  33155701 ttctaaggtgcacaagtgagacaagtcttgcatcatgcacaagctag-ttttcaccattggatcaataaatcccaccattaaattaaatgagaaatgatt 33155603  T
Q  304 tgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagcc 381  Q
    |||||| || |||  ||||| |||||  ||||||||||||| |||  |  ||||| ||||||||| ||| ||||||||    
T  33155602 tgactttttgatccgatggtgaaaaagtcacttgtgcatggtgcaggaccattttgcttgtgcatgttaaacaaagcc 33155525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 204 - 381
Target Start/End: Complemental strand, 3769973 - 3769802
Alignment:
Q  204 ttctaaggtgcataattgaaccaagtcttgcatcatgcacaaattagttttttcccattagattgataaatctcatcgttaaatcaaataagatatgatg 303  Q
    ||||| |||||| || |||| ||||||||||||||||||||| ||||||||  || ||| ||      |||| || | ||| ||||||| |||||||||     
T  3769973 ttctatggtgcacaagtgaaacaagtcttgcatcatgcacaagttagttttcacc-attggacc----aatcccaccattagatcaaatgagatatgata 3769879  T
Q  304 tgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaagcc 381  Q
    |||||| || ||| |||||| ||||  |||||||||||||| |||| |  |||||||||||| || | ||||||||||    
T  3769878 tgacttgttgatccaatggtgaaaagaacacttgtgcatggtgcaaga-cattttacttgtgtatgtgagacaaagcc 3769802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 38676461 - 38676406
Alignment:
Q  320 tggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagac 375  Q
    |||| |||||||||||||||||||| |||| | || |||||||||||| |||||||    
T  38676461 tggtgaaaaacacacttgtgcatggtgcaagactaatttacttgtgcacattagac 38676406  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 378
Target Start/End: Complemental strand, 4522345 - 4522253
Alignment:
Q  286 atcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaa 378  Q
    ||||||| |||||||||| |||||||| ||  |||||| |||  |||||||||| |||  |||| | ||||||||||||||  ||||||||||    
T  4522345 atcaaatgagatatgatgggacttattgattcaatggtgaaaggcacacttgtgaatgatgcaagactattttacttgtgcgcattagacaaa 4522253  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 43931790 - 43931737
Alignment:
Q  259 cattagattgataaatctcatcgttaaatcaaataagatatgatgtgacttatt 312  Q
    ||||||||  |||||||||| | ||||||||||| | |||||||||||||||||    
T  43931790 cattagatgaataaatctcaccattaaatcaaatgatatatgatgtgacttatt 43931737  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 39734568 - 39734506
Alignment:
Q  282 ttaaatcaaataagatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatgg 344  Q
    |||||| ||| | |||||||||||||||||| || |||| ||| ||||||||||||| |||||    
T  39734568 ttaaattaaacatgatatgatgtgacttatttatttaattgtagaaaacacacttgtacatgg 39734506  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 378
Target Start/End: Original strand, 43405204 - 43405288
Alignment:
Q  294 agatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaa 378  Q
    |||| |||||| | ||||| |||||||||| ||||  | |||||||||||  |||| || |||||||||||| || |||||||||    
T  43405204 agatgtgatgtaatttattgatctaatggtgaaaaggatacttgtgcatgatgcaagatcattttacttgtgtatgttagacaaa 43405288  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 3006324 - 3006408
Alignment:
Q  295 gatatgatgtgacttattaatctaatggtaaaaaacacacttgtgcatggcgcaaaattattttacttgtgcatattagacaaag 379  Q
    ||||| ||| || ||||| ||||||||||  |||| | | |||||||||| |||||| || || ||||||| |||||||||||||    
T  3006324 gatattatgcgagttattgatctaatggtcgaaaatatatttgtgcatggtgcaaaactaattgacttgtgtatattagacaaag 3006408  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 338 - 374
Target Start/End: Original strand, 3429931 - 3429967
Alignment:
Q  338 tgcatggcgcaaaattattttacttgtgcatattaga 374  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  3429931 tgcatggtgcaaaactattttacttgtgcatattaga 3429967  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 27925400 - 27925340
Alignment:
Q  269 ataaatctcatcgttaaatcaaataagatatgatgtgacttattaatctaatggtaaaaaa 329  Q
    |||||| ||||  |||||| |||| ||||||||||||| ||||| |||||||| |||||||    
T  27925400 ataaatttcatgattaaataaaatgagatatgatgtgatttattgatctaatgataaaaaa 27925340  T

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