View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12904_low_4 (Length: 476)
Name: NF12904_low_4
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12904_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 1320337 - 1319891
Alignment:
| Q |
16 |
gcagagataaaacatcaacaatggagttggtagaaaaatgataataacgagagaatcaaaccactgccaaaaatcttttgacaaaagatcaatgcagata |
115 |
Q |
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| T |
1320337 |
gcagagataaaacatcaacaatggagttggtagaaaaatgataataacgagagaatcaaaccactgccaaaaatcttttgacaaaagatcaatgcagata |
1320238 |
T |
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| Q |
116 |
ggctacaaatggaaacaatattttaaaattagacattgtgagtatattttttctgactttgtagattgttctcaaatagaattataacgttaatatttta |
215 |
Q |
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| T |
1320237 |
ggctacaaatggaaacaatattttaaaattagacattgtgagtatattttttctgactttttagattgttctcaaatagaattataacgttaatatttta |
1320138 |
T |
|
| Q |
216 |
aatatggtcatgactcttgacaaaatttacttatataatctttatgataaatgttagagactaaattgataactaagccctagttaattttttaaatata |
315 |
Q |
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| T |
1320137 |
aaaatggtcatgactcttgacgaaatttacttatataatctttatgataaatgttagagactaaattgataactaa-acctagttaattttttaaatata |
1320039 |
T |
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| Q |
316 |
attacctgatgatagttaatagtaaatggttaaatacaaagagcaacttaacaatctaatag--attttgtttttgaaagattaacaatctaatagatag |
413 |
Q |
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|| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1320038 |
atgacctgatgataattaatagtaaatggttaaatacaaatagcaacttaacaatctaatagtttttttttttttgaaagattaacaatctaatagatag |
1319939 |
T |
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| Q |
414 |
aatcaaatgatcgttttaaaaaattcataatc-tataaacctattttg |
460 |
Q |
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| T |
1319938 |
aatcaaatgatcgttttaaaaaattcataatcttataaacctattttg |
1319891 |
T |
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