View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12904_low_6 (Length: 405)
Name: NF12904_low_6
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12904_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 6 - 391
Target Start/End: Complemental strand, 5052371 - 5051987
Alignment:
| Q |
6 |
tgaagggcatccctgttatatcaccgtgcaaatttgatattaactactatatttgaaatccatattgtatattataatcaannnnnnnaacattgactag |
105 |
Q |
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| T |
5052371 |
tgaagggcatccctgttatagcaccgtgcaaatttgatattaactactatatttgaaagccatattgtatattataatcaaattttttaacattgactag |
5052272 |
T |
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| Q |
106 |
ttaagtcaatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtactattgtcttcaat |
205 |
Q |
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| T |
5052271 |
ttaagtcaatgcaaagcattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatctgaaaccaaggtactattgtcttaaat |
5052172 |
T |
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| Q |
206 |
gttcactgaatattccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatactttgaacctcactatctttaagagtggcctatgaaca |
305 |
Q |
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| T |
5052171 |
gttcactgaat-ttccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatacattgaacctcactgtctttgagagtggcctatgaaca |
5052073 |
T |
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| Q |
306 |
tggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgat |
391 |
Q |
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| T |
5052072 |
tggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtgat |
5051987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 5048273 - 5048194
Alignment:
| Q |
113 |
aatgcaaaacattaaaacatatccaaatttgatgagatcatgcctacgtcatgaccataaaacatttgaaaccaaggtac |
192 |
Q |
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| T |
5048273 |
aatgcaaagcattaaaacatatccaaatttgatgagatcatgaccaagtcagaacagtcaaacatttgaaactaaggtac |
5048194 |
T |
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