View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12904_low_7 (Length: 397)
Name: NF12904_low_7
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12904_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 26137672 - 26138047
Alignment:
| Q |
8 |
ccaagaatattgatgttgtcaattgtgttcgatcttacggacgagacgaacatcatatcttaatttggagtatttggtgttttcaatttcataggttgtt |
107 |
Q |
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| T |
26137672 |
ccaacaatattgatgttgtcaattgtgctagaccttacggacgagacgaacatcatatcttaatttcgagtatttggtgttttcaatttcataggttgtt |
26137771 |
T |
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| Q |
108 |
atattagtaatgtaattttgttaaaaactaatagtaatagtgtgtaattaaaatgaataatccgcgtaaggaaaatgtgaccaactaacaaaagagatga |
207 |
Q |
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| T |
26137772 |
atattagtaatgtaattttgttaaaaactaacagtaatagtgtgtaattaaaatgaataatccgcgtaaggaaaatgtgaccaactaacaaaagagatga |
26137871 |
T |
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| Q |
208 |
ataattgattagaaggggcaatcaaaggtttccaaccacttggtagaatatgtatgctcccacctaaagtttgaatttatacctttagaacaattattcc |
307 |
Q |
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| T |
26137872 |
ataattgattagaaggagcaatcaaaggtttccaaccacttggtagaatatgtatgctcccacctaaagtttgaatttatacctttggaacaattattcc |
26137971 |
T |
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| Q |
308 |
atag-ttaattgagaaagacgtaaggcaaagcatgatcattgattgttaaaaaactttctatataaacacaacgtg |
382 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26137972 |
atagattaattgagaaagacgtaaggcaaagcatgatcattgattgttaaaaaactttctatataaacacaacgtg |
26138047 |
T |
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