View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12904_low_8 (Length: 362)

Name: NF12904_low_8
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12904_low_8
NF12904_low_8
[»] chr3 (3 HSPs)
chr3 (19-346)||(21086427-21086755)
chr3 (130-259)||(18192990-18193120)
chr3 (149-254)||(19277710-19277814)
[»] chr7 (5 HSPs)
chr7 (76-254)||(11671352-11671530)
chr7 (139-254)||(49003983-49004098)
chr7 (146-254)||(8270988-8271095)
chr7 (94-200)||(7629484-7629590)
chr7 (194-254)||(8650557-8650617)
[»] chr5 (2 HSPs)
chr5 (61-263)||(7958660-7958863)
chr5 (111-254)||(11992908-11993051)
[»] chr4 (1 HSPs)
chr4 (29-254)||(27432549-27432776)
[»] chr2 (2 HSPs)
chr2 (63-263)||(10422800-10423001)
chr2 (89-166)||(20486270-20486347)
[»] chr1 (1 HSPs)
chr1 (206-293)||(2015283-2015369)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 21086755 - 21086427
Alignment:
Q  19 cttgtatatatgttttctctttttggcaattaagttaagtgaagtttttctctcgctatggagaaaaaa-taatatcaattgtttttagcactaaataga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  21086755 cttgtatatatgttttctctttttggcaattaagttaagtgaagtttttctctagctatggagaaaaaaataatatcaattgtttttagcactaaataga 21086656  T
Q  118 atcatacatccacaattacaaaagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataat 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||    
T  21086655 atcaaacatccacaattacaaaagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacggtgttgttgaccaatgaaaaggaaataat 21086556  T
Q  218 tttcgatatatatgttttattacattagagtttaaaattaaatcacacttgacagaggaacgatcaatgatctcttatatttgacaaactactcaaagtg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||    
T  21086555 tttcgatatatatgttttattacattagagtttaaaattaaatcacacttgacagaggaacgatgaatgatctcttatatttggaaaactcctcaaagtg 21086456  T
Q  318 gaaaatgaaacgaaaaagtggacgaaaat 346  Q
    |||||||| | |||||||||| |||||||    
T  21086455 gaaaatgagaagaaaaagtggtcgaaaat 21086427  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 259
Target Start/End: Original strand, 18192990 - 18193120
Alignment:
Q  130 caattacaaaagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatata 229  Q
    |||||||| |||||| |||||||||||||  ||||| ||||| |||| ||||||||||| ||| ||||| ||||  ||||||||||||||||||||||      
T  18192990 caattacagaagagatcaaaagagaatatggaaatgagaagaattttggtggatggacattgtggttgatcaatgaaaaggaaataattttcgatatact 18193089  T
Q  230 tgttttattacattagagttt-aaaattaaa 259  Q
     |||||||||||||||||||| |||||||||    
T  18193090 cgttttattacattagagtttgaaaattaaa 18193120  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 19277814 - 19277710
Alignment:
Q  149 aagagaatataaaaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagt 248  Q
    ||||||||||||||||| ||| | ||||  |||||||||| ||| ||||| ||||  |||||||||||| |||||||||| | |||||||| ||||||||    
T  19277814 aagagaatataaaaatgagaaaa-ttttgatggatggacattgtggttgatcaatgaaaaggaaataatcttcgatatatctattttattatattagagt 19277716  T
Q  249 ttaaaa 254  Q
    ||||||    
T  19277715 ttaaaa 19277710  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 11671530 - 11671352
Alignment:
Q  76 atggagaaaaaataatatcaattgtttttagcactaaatagaatcatacatccacaattacaaaagagagcaaaagagaatataaaaatgggaagagttt 175  Q
    ||||||||| |||||||  | ||||||||   || ||||||||| | || ||  |||||| | |||||| |||||||||||||| ||| | ||||| |||    
T  11671530 atggagaaacaataataatatttgttttttctaccaaatagaataaaacgtcggcaattatataagagatcaaaagagaatatagaaaagagaagatttt 11671431  T
Q  176 tcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagtttaaaa 254  Q
    | |||||||| || ||| ||||| ||||  ||| |||||||| || |||||||||||||||||||||||||||||||||    
T  11671430 tggtggatgggcattgtggttgatcaatgaaaaagaaataatctttgatatatatgttttattacattagagtttaaaa 11671352  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 254
Target Start/End: Complemental strand, 49004098 - 49003983
Alignment:
Q  139 aagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttatt 238  Q
    |||||| |||||||||||| | ||||| ||||| |||| ||||| ||||| ||| ||||| ||||| ||| || ||||| || ||||||| |||||||||    
T  49004098 aagagatcaaaagagaataaataaatgagaagaattttggtggaaggacattgtggttgatcaataaaaacgatataatctttgatatatctgttttatt 49003999  T
Q  239 acattagagtttaaaa 254  Q
    |||||| |||||||||    
T  49003998 acattaaagtttaaaa 49003983  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 8270988 - 8271095
Alignment:
Q  146 caaaagagaatataaaaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattag 245  Q
    |||||||||||||| | ||| ||||| |||| ||||||||||| ||| ||||| ||||  ||||||||||| ||| |||||||  |||||||||||||||    
T  8270988 caaaagagaatatagagatgagaagaattttggtggatggacattgtggttgatcaatgaaaaggaaataacttt-gatatatccgttttattacattag 8271086  T
Q  246 agtttaaaa 254  Q
     ||||||||    
T  8271087 tgtttaaaa 8271095  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 7629590 - 7629484
Alignment:
Q  94 caattgtttttagcactaaatagaatcatacatccacaattacaaaagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacagtgtc 193  Q
    |||||| ||||| ||| ||||||||||| ||| | ||||| ||| | || || ||||||||||||| |||||||||| |||||  |||||||||| |||     
T  7629590 caattgattttaccaccaaatagaatcaaacaccgacaataacagaggatagtaaaagagaatatagaaatgggaagggttttgatggatggacattgtg 7629491  T
Q  194 gttgacc 200  Q
    |||||||    
T  7629490 gttgacc 7629484  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 8650617 - 8650557
Alignment:
Q  194 gttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagtttaaaa 254  Q
    |||||| |||| ||||||||||||  ||||||||| |||||||||| ||||||||||||||    
T  8650617 gttgactaataaaaaggaaataatcatcgatatatctgttttattaaattagagtttaaaa 8650557  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 61 - 263
Target Start/End: Complemental strand, 7958863 - 7958660
Alignment:
Q  61 agtttttctctcgctatggagaaaaaataatatcaattgtttttagcactaaatagaatcatacatccacaattacaaaagagagcaaaagagaatataa 160  Q
    ||||||| |||||| ||| ||||| ||||| | || |||||  || | | ||||||||||| |||||  |||||||| |||||| ||  ||||||||||     
T  7958863 agtttttttctcgcaatgaagaaacaataacaacatttgttcataccgccaaatagaatcaaacatcggcaattacataagagatcaggagagaatatag 7958764  T
Q  161 aaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagttt-aaaattaaa 259  Q
    ||||| ||||| |||| ||||||||||| ||  ||||| ||||  |||| ||||||| || |||||||  ||||||||| |||||||||| |||||||||    
T  7958763 aaatgagaagaattttagtggatggacattgcagttgatcaatgaaaagaaaataatctttgatatatccgttttattatattagagtttaaaaattaaa 7958664  T
Q  260 tcac 263  Q
    ||||    
T  7958663 tcac 7958660  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 111 - 254
Target Start/End: Complemental strand, 11993051 - 11992908
Alignment:
Q  111 aaatagaatcatacatccacaattacaaaagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaagg 210  Q
    ||||||||||| ||||   |||||| |||||||| ||||||| |||||  ||||| ||||| | || ||||||||| | |||   ||| ||||| |||||    
T  11993051 aaatagaatcaaacattggcaattataaaagagatcaaaagataatattgaaatgagaagaatgttggtggatggagattgtttatgatcaataaaaagg 11992952  T
Q  211 aaataattttcgatatatatgttttattacattagagtttaaaa 254  Q
    ||||||| |||||| |||  ||||||| ||||||||||||||||    
T  11992951 aaataatcttcgatgtatccgttttatcacattagagtttaaaa 11992908  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 27432549 - 27432776
Alignment:
Q  29 tgttttctctttttggcaattaagttaagtgaagttttt--ctctcgctatggagaaaaaataatatcaattgtttttagc-actaaatagaatcataca 125  Q
    ||||||||||||||  |||||||||||| ||||||||||  ||||||| ||  | ||| | ||| | || ||| ||||| | |||||||||||||| |||    
T  27432549 tgttttctcttttta-caattaagttaaatgaagtttttttctctcgcaataaacaaacagtaacaacatttggttttaactactaaatagaatcaaaca 27432647  T
Q  126 tccacaattacaaaagagagcaaaagagaatataaaaatgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgata 225  Q
    ||  |||||||| ||||||  ||||||||||||| ||||| |||   |||| || |||||||| ||| ||| | ||||  ||| |||||||| |||||||    
T  27432648 tcggcaattacagaagagattaaaagagaatatagaaatgagaattttttttgttgatggacattgtggttaatcaatgaaaaagaaataatattcgata 27432747  T
Q  226 tatatgttttattacattagagtttaaaa 254  Q
    |||  |||||||||| |||||||||||||    
T  27432748 tatccgttttattactttagagtttaaaa 27432776  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 263
Target Start/End: Original strand, 10422800 - 10423001
Alignment:
Q  63 tttttctctcgctatggagaaaaaataatatcaattgtttttagcactaaatagaatcatacatccacaattacaaaagagagcaaaagagaatataaaa 162  Q
    ||||| |||||| ||| ||||| ||||| | || |||||  || ||| ||||||||||| |||||  |||||||| |||||| ||  |||||| ||| ||    
T  10422800 tttttttctcgcaatgaagaaacaataacaacatttgttcataccaccaaatagaatcaaacatcggcaattacataagagatcaggagagaacatagaa 10422899  T
Q  163 atgggaagagttttcgtggatggacagtgtcgttgaccaatacaaaggaaataattttcgatatatatgttttattacattagagttt-aaaattaaatc 261  Q
    ||| ||||| |||| ||||||||||| ||  ||||| ||||  |||| ||||||| || |||||||  ||||||||| |||||||||| |||||||||||    
T  10422900 atgagaagaattttggtggatggacattgcagttgatcaatgaaaagaaaataatatttgatatatccgttttattatattagagtttaaaaattaaatc 10422999  T
Q  262 ac 263  Q
    ||    
T  10423000 ac 10423001  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 20486347 - 20486270
Alignment:
Q  89 aatatcaattgtttttagcactaaatagaatcatacatccacaattacaaaagagagcaaaagagaatataaaaatgg 166  Q
    |||| |||||||||||| ||  ||||| ||||| |||||  |||||| | ||||||  ||||||||||||||||||||    
T  20486347 aatagcaattgtttttaccaaaaaataaaatcaaacatcgccaattaaagaagagactaaaagagaatataaaaatgg 20486270  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 206 - 293
Target Start/End: Original strand, 2015283 - 2015369
Alignment:
Q  206 aaaggaaataattttcgatatatatgttttattacattagagtttaaaattaaatcacacttgacagaggaacgatcaatgatctctt 293  Q
    |||||||||||| |||||||||| | |||||||| ||||||||||||||||||| |||| |||||| |||||| || | |||||||||    
T  2015283 aaaggaaataatcttcgatatatctattttattaaattagagtttaaaattaaaccaca-ttgacaaaggaacaatgagtgatctctt 2015369  T

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