View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12904_low_9 (Length: 359)
Name: NF12904_low_9
Description: NF12904
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12904_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 30019373 - 30019508
Alignment:
| Q |
213 |
tcattgtttccttcaaaggttgtcatgttctttgcaaagagaaaaacacatccaagcaagtgaa-tgtaattctttaactgaaaagaagtacaatataag |
311 |
Q |
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| T |
30019373 |
tcattgtttccttcaaaggttgtcatgttctttgcaaagagaaaaacacatccaagcaagtgaaatgtaattcttcaactgaaaagaagtacaatataag |
30019472 |
T |
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| Q |
312 |
tgttgaactagtcttatttctgatgaggttaattat |
347 |
Q |
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| T |
30019473 |
tgttgaactagtcttatttctgatgaggttaattat |
30019508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 30019193 - 30019254
Alignment:
| Q |
33 |
gctgctgcaactgtgaatgtaaatgattcaccaaactcctcaaagggaaaatctcctgtaga |
94 |
Q |
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| T |
30019193 |
gctgctgcaactgtgaatgtaaatgattcaccaaactcctcaaagggaaaatctcctgtaga |
30019254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 30019310 - 30019349
Alignment:
| Q |
150 |
gataataataataatgttgaagctggaccagcttcagatg |
189 |
Q |
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| T |
30019310 |
gataataataataatgttgaagctggaccagcttcagatg |
30019349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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