View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_high_8 (Length: 343)
Name: NF12905_high_8
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_high_8 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 216 - 328
Target Start/End: Complemental strand, 231042 - 230930
Alignment:
| Q |
216 |
tgatattcaattgaaggaatccaagtcaaatgtgatttgaagtgtgaaagtttcaatgcccgttgttttttgtaatatgccataaaaacaccttgcattg |
315 |
Q |
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| T |
231042 |
tgatattcaattgaaggaatccaagccaaatgtgatttgaagtctgagggtttcaatgcccgttgttttttgtaatatgccataaaagcaccttgcattg |
230943 |
T |
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| Q |
316 |
gtaaaacacagat |
328 |
Q |
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| T |
230942 |
gtaaaacacagat |
230930 |
T |
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Target: scaffold0005; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 137
Target Start/End: Complemental strand, 231233 - 231125
Alignment:
| Q |
28 |
agttgaaaaggatgacgtagaagagtatgagtgtggcaaccaacgatgaaggagtggcaggtatcgggtggaaaattttcatgttgaaagagaggggtgg |
127 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||| | ||||| |||||||||| | || ||||||| || || |||||||||||||||||| |
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| T |
231233 |
agttgaaaaggatgacgtaaaagagtatgagtg--gcaaccaatggtgaagaagtggcaggtgttggatggaaaaattgcacgttgaaagagaggggtgg |
231136 |
T |
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| Q |
128 |
g-ttcatgagg |
137 |
Q |
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| T |
231135 |
gattcatgagg |
231125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 216 - 328
Target Start/End: Original strand, 14586332 - 14586444
Alignment:
| Q |
216 |
tgatattcaattgaaggaatccaagtcaaatgtgatttgaagtgtgaaagtttcaatgcccgttgttttttgtaatatgccataaaaacaccttgcattg |
315 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14586332 |
tgatattcaattgaaggaatccaagccaaatgtgatttgaagtctgagggtttcaatgcccgttgttttttgtaatatgccataaaagcaccttgcattg |
14586431 |
T |
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| Q |
316 |
gtaaaacacagat |
328 |
Q |
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| T |
14586432 |
gtaaaacacagat |
14586444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 14586141 - 14586249
Alignment:
| Q |
28 |
agttgaaaaggatgacgtagaagagtatgagtgtggcaaccaacgatgaaggagtggcaggtatcgggtggaaaattttcatgttgaaagagaggggtgg |
127 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||| | ||||| |||||||||| | || ||||||| || || |||||||||||||||||| |
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| T |
14586141 |
agttgaaaaggatgacgtaaaagagtatgagtg--gcaaccaatggtgaagaagtggcaggtgttggatggaaaaattgcacgttgaaagagaggggtgg |
14586238 |
T |
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| Q |
128 |
g-ttcatgagg |
137 |
Q |
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| T |
14586239 |
gattcatgagg |
14586249 |
T |
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