View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_high_9 (Length: 284)
Name: NF12905_high_9
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 34259326 - 34259058
Alignment:
| Q |
1 |
atttggttcggtttctttaaacaccggataaagtcttagcttgcctaatgttcttggagttaagagtcatcgctttaaaatattttggttttcatcttgt |
100 |
Q |
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| T |
34259326 |
atttggttcggtttttttaaacaccggataaagtcttagcttgcctaatgttcttggagttaagagtcatcactttaaaatattttggttttcatcttgt |
34259227 |
T |
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| Q |
101 |
aggcatacttagaacatggcatacctgaaagtccggaaatggttgtagccctaatgcaaaaggtatgattatttgagaaatattctcagcattatatata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34259226 |
aggcatacttagaacatggcatacctgaaagtccggaaatggttgtagccctaatgcaaaaggtatgattatctgagaaatattctcagcattatatata |
34259127 |
T |
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| Q |
201 |
ttttttctaaacaaaataatactcaaagtagtagaaatgttactgattcttcttatttgaatggatatt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34259126 |
ttttttctaaacaaaataatactcaaagtagtagaaatgttactgattcttctcatttgaatggatatt |
34259058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 6566830 - 6566898
Alignment:
| Q |
97 |
ttgtaggcatacttagaacatggcatacctgaaagtccggaaatggttgtagccctaatgcaaaaggta |
165 |
Q |
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||||||||||| ||||| ||||||||||| || ||||| |||||||||||||| || ||||| |||||| |
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| T |
6566830 |
ttgtaggcatatttagagcatggcataccagagagtcccgaaatggttgtagcactgatgcagaaggta |
6566898 |
T |
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