View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_low_1 (Length: 814)
Name: NF12905_low_1
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_low_1 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 751; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 8 - 814
Target Start/End: Original strand, 40627745 - 40628550
Alignment:
| Q |
8 |
catcatcatcaaatccaacaacatcggattccttagcaacgagagacaattgtgtggttccgcgtagtatgtgaacggtggacgatgaggactctattga |
107 |
Q |
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| T |
40627745 |
catcatcatcaaatccaacaacatcggattccttagcaacgagagacaattgtgtggttccgcgtagtatgtgaacggtggacgatgaggactctattga |
40627844 |
T |
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| Q |
108 |
cttgcccaaaccatatgcccttcttcttcttgaggcatcttcaattttgtttctaatagcattgatcttgttactaataacatgtcgggtccagtacttg |
207 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40627845 |
cttgcccaaaccatatgcccttcttcttctggaagcatcttcaattttgtttctaatagcattgatcttgttactaataacatgtcgggtccagtacttg |
40627944 |
T |
|
| Q |
208 |
aaggtgtaaacgagaatcgacctatgcttcaatttggtatcatagtcgcgaatgacagacgcaatttcatcggcaataccttgcatctggtccacccaga |
307 |
Q |
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| T |
40627945 |
aaggtgtaaacgagaatcgacctatgcttcaatttggtatcatagtcgcgaatgacagatgcaatttcatcggcaataccttgcatttggtccacccaga |
40628044 |
T |
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| Q |
308 |
ttctagatcttctatctatttcactcctgtctcgtatatcttgatgcagcgcatccatcaattccatttcccttctgattgattggacttcctgtttgag |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40628045 |
ttctagatcttctatctatttcactcctgtctcgtatatcttgatgcagtgcatccatcaattccatttcccttctgattgattggacttcctgtttgag |
40628144 |
T |
|
| Q |
408 |
ccctgtgacaggtcgatatgaggaggacgaggtagctggttctggatgttcctcagaacgtacaagctcttgttgtgttgctccttgaataatatttgca |
507 |
Q |
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| T |
40628145 |
ccctgtgacaggtcgatatgaggaggacgaggcagctggttctggatgttcctcagaacgtacaagctcttgttgtgttgctccttgaataatatttgca |
40628244 |
T |
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| Q |
508 |
atgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctccaacaaccaccat |
607 |
Q |
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| T |
40628245 |
atgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctccaacaaccaccat |
40628344 |
T |
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| Q |
608 |
taccagcagcatcaacaagggagcgaccattttgagccacgactctcagttgatcaacccatactctcttgtctatcattcatgctttctgcactttcag |
707 |
Q |
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| T |
40628345 |
taccagcagcatcaacaagggagcgaccattttgagccacaactctcagttggtcaacccatactctc-tgtctatcattcatgctttctgcactttcag |
40628443 |
T |
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| Q |
708 |
cagtgtccctaagaaacacgtgcattagatctaaatctctttgcacacagttcaaattattatccacggacctgcacaacttcacaatccagacaataac |
807 |
Q |
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| T |
40628444 |
cagtgtccctaagaaacacgtgcattagatctaaatctctttgcaaacactgcaaattattatccatggacctgcacaacttcacaatccagacaataac |
40628543 |
T |
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| Q |
808 |
ttgatac |
814 |
Q |
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||||||| |
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| T |
40628544 |
ttgatac |
40628550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 40637532 - 40637111
Alignment:
| Q |
13 |
tcatcaaatccaacaacatcggattccttagcaacgagagacaattgtgtggttccgcgtagtatgtgaacggtggacga---tgaggactctattgact |
109 |
Q |
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| T |
40637532 |
tcatcaaatccaacgacatttgattctttagcaacgagagacaattgcgccgttccgcgaagtatatgaactgtggaggacattgacgactcaattgtct |
40637433 |
T |
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| Q |
110 |
tgcccaaaccatatgcccttcttcttcttgaggcatcttcaattttgtttctaatagcattgatcttgttactaataacatgtcgggtccagtacttgaa |
209 |
Q |
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| T |
40637432 |
tgcccaaaccatatgcccttcttcttctggaggcatcttcaattttgtttctgatagcattgatctcttcgctaataacatgtcgggtccaaaacttgag |
40637333 |
T |
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| Q |
210 |
ggtgtaaacgagaatcgacctatgcttcaatttggtatcatagtcgcgaatgacagacgcaatttcatcggcaataccttgcatctggtccacccagatt |
309 |
Q |
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| T |
40637332 |
agtgtataacagaattgacttatacttcaatttagcatcataacgttgaatgacagattcaatttcattgacaataccatgcatttgctccacccaaatt |
40637233 |
T |
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| Q |
310 |
ctagatcttctatctatttcactcctgtctcgtatatcttgatgcagcgcatccatcaattccatttcccttctgattgattggacttcctgtttgagcc |
409 |
Q |
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| T |
40637232 |
gtagatcttctatccaggtctctcatttctagtacatcttgaaacagtgcaaacatcaattcctcttcctctctgattgattggacttcctgtttgagcc |
40637133 |
T |
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| Q |
410 |
ctgtgacaggtcgatatgagga |
431 |
Q |
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| T |
40637132 |
ccgtgacaggtcggtacgagga |
40637111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 520 - 807
Target Start/End: Complemental strand, 40636902 - 40636610
Alignment:
| Q |
520 |
gtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctccaacaaccaccattaccagcagcat |
619 |
Q |
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| T |
40636902 |
gtcttcctgtgtgagagattaagaatctcatccaagaagcaattgatgtccttcggaaacataattcttctcctccaacaaccacccttagcagcagcat |
40636803 |
T |
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| Q |
620 |
caacaagggagcgaccattttgagccacgactctcagttgatcaacccatactctcttgtctatcattcat---gctttctgcactttcagcag---tgt |
713 |
Q |
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||| |||||| |||||||||||||||| ||||||||| |||||||||||| || ||||| |||||||| | || | |||| ||||||| | | |
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| T |
40636802 |
caagaagggacttgccattttgagccacgattctcagttgttcaacccatactttc-tgtctttcattcattgggacttgttcactctcagcagcaatat |
40636704 |
T |
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| Q |
714 |
ccctaagaaacacgtgcattagatctaaatctctttgcacacagttcaaattattatccacggacctgcacaacttcacaatccagacaataac |
807 |
Q |
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| T |
40636703 |
ccctaagaaatgcatgcattaaagctaaatctctttgggtgcacttcaaattattgtccatagacctccacaacttcacaatccagacaataac |
40636610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 353 - 439
Target Start/End: Complemental strand, 40658014 - 40657928
Alignment:
| Q |
353 |
gcagcgcatccatcaattccatttcccttctgattgattggacttcctgtttgagccctgtgacaggtcgatatgaggaggacgagg |
439 |
Q |
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| T |
40658014 |
gcagcgcatccatcaattccttttcccttctgattgattggactttctctttgagccccatgacaggccgatacgaggaggaggagg |
40657928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 501 - 605
Target Start/End: Complemental strand, 40657809 - 40657708
Alignment:
| Q |
501 |
atttgcaatgctataagtagtcttcctgtgtgagatattaagaatctcttccaacaagcagttgatgtccttggcaaacttagtttttctgctccaacaa |
600 |
Q |
| |
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| T |
40657809 |
atttgcaatgcaataaatggccttcctatctgatatatcaagaatctctttcaacaaacagttgatatccttggcaaactta---attctgctcaaacaa |
40657713 |
T |
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| Q |
601 |
ccacc |
605 |
Q |
| |
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||||| |
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| T |
40657712 |
ccacc |
40657708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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