View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_low_10 (Length: 380)
Name: NF12905_low_10
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_low_10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 41717344 - 41717723
Alignment:
| Q |
1 |
atccagccgtgcatcaagagtattttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaattttccacaaatataatcaggt |
100 |
Q |
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| T |
41717344 |
atccagccgtgcatcaagagtattttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaattttccacaaatataatcaggt |
41717443 |
T |
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| Q |
101 |
atgctgaaactgatatcgaatattaaagcagctacaaaactaatcaaatgtttagatggtcatcagagaaggctttctcgtgtctcaatgtcaaatcaac |
200 |
Q |
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| T |
41717444 |
atgctgaaactgatatcgaatattaaagcagctacacaactaatcaaatgtttagatggtcatcagagaaggctttctcatgtctcaatgtcaaatcaac |
41717543 |
T |
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| Q |
201 |
acgaaaatacaaaagcaacaaactgtagagttgtttgaccttgtggtactgtcgtgatttattgagtctcccaaacccataataaaacaactttagctag |
300 |
Q |
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| T |
41717544 |
acgaaaatacaaaagcaacaaactgtagagttgtttgaccttgtggtactgtcgtgatttattgagtctcccaaacccataataaaacaactttagctag |
41717643 |
T |
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| Q |
301 |
tatgctcagtcaactaaaaacatggtaaccttaggtttgaaactcttgattaattttgaccagaatgtgtaactaatcaa |
380 |
Q |
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| T |
41717644 |
tatgctcagtcaactaaaaacatggtaaccttaggtttgaaactcttgattaattttgaccagaatgtgtaactaatcaa |
41717723 |
T |
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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 2420913 - 2420846
Alignment:
| Q |
11 |
gcatcaagagtattttcacacacaatctttccatcacgagaagccaacaccaccccaccagagctgaa |
78 |
Q |
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| T |
2420913 |
gcatcaagtgtattttcaaacacaatctttccatcatgagaagccaataccacacctccagagctgaa |
2420846 |
T |
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