View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12905_low_11 (Length: 363)

Name: NF12905_low_11
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12905_low_11
NF12905_low_11
[»] chr7 (1 HSPs)
chr7 (1-351)||(43994703-43995053)
[»] chr5 (2 HSPs)
chr5 (160-198)||(26688443-26688481)
chr5 (160-198)||(26958174-26958212)
[»] chr4 (2 HSPs)
chr4 (160-198)||(30478587-30478625)
chr4 (160-198)||(48013624-48013662)
[»] chr2 (1 HSPs)
chr2 (160-198)||(19521619-19521657)
[»] chr1 (1 HSPs)
chr1 (160-197)||(45811001-45811038)


Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 43995053 - 43994703
Alignment:
Q  1 tttgctcaatttcactttaactcatgttcttgtttatttgtgtagattctttaatttccgttccaatctagggtttagtttttgctaaatatcctagatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43995053 tttgctcaatttcactttaactcatgttcttgtttatttgtttagattctttaatttccgttccaatctagggtttagtttctgctaaatatcctagatt 43994954  T
Q  101 caaagatttagtaattttatagcttatatattaatcagttctgatttggagttatacggttttgctagtttattgagaatcgattttgatttcaattcag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43994953 caaagatttagtaattttatagcttatatattaatcagttctgatttggatttatacggttttgctagtttattgagaatcgattttgatttcaattcag 43994854  T
Q  201 tgacatctctagtaacgattgtttggacaagtaagtggatcatatgaagtgttcatttggttggattgcttcaccacctatcatccattcagatgttcaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43994853 tgacatctctagtaacgattgtttggacaagtaagtggatcatatgaagtgttcatttggtttgattgcttcaccacctatcatccattcagatgttcaa 43994754  T
Q  301 tttttccaagcttcttctaataaccaaatttccctcagagtcacacaggtt 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43994753 tttttccaagcttcttctaataaccaaatttccctcagagtcacacaggtt 43994703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 26688443 - 26688481
Alignment:
Q  160 ttttgctagtttattgagaatcgattttgatttcaattc 198  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  26688443 ttttgctagtttattgagaatcgattttaatttaaattc 26688481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 26958174 - 26958212
Alignment:
Q  160 ttttgctagtttattgagaatcgattttgatttcaattc 198  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  26958174 ttttgctagtttattgagaatcgattttaatttaaattc 26958212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 30478587 - 30478625
Alignment:
Q  160 ttttgctagtttattgagaatcgattttgatttcaattc 198  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  30478587 ttttgctagtttattgagaatcgattttaatttgaattc 30478625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Complemental strand, 48013662 - 48013624
Alignment:
Q  160 ttttgctagtttattgagaatcgattttgatttcaattc 198  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  48013662 ttttgctagtttattgagaatcgattttaatttgaattc 48013624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 19521619 - 19521657
Alignment:
Q  160 ttttgctagtttattgagaatcgattttgatttcaattc 198  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  19521619 ttttgctagtttattgagaatcgattttaatttgaattc 19521657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 45811001 - 45811038
Alignment:
Q  160 ttttgctagtttattgagaatcgattttgatttcaatt 197  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  45811001 ttttgctagtttattgagaatcgattttaatttgaatt 45811038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University