View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_low_2 (Length: 548)
Name: NF12905_low_2
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 35447499 - 35447890
Alignment:
| Q |
1 |
acaaaacctataaagcaacaaacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagagacagatcaaagcatctgacagg |
100 |
Q |
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| T |
35447499 |
acaaaacctataaagcaacaaacaacacaagatgattctgagagcttatatcacagcctggtcagggacaaaaaagaaacagatcaaagcatctgacagg |
35447598 |
T |
|
| Q |
101 |
aagtatagaaatcgataatgacgacaatgatcacatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagacttgtgg |
200 |
Q |
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| T |
35447599 |
aagtatagaaatcgataatgacgacaatgatcgcatgaattacaaaaaagtcatagctagtcctgaaaaataaagattgaatgacaataaagacttgtgg |
35447698 |
T |
|
| Q |
201 |
ctaagcggctcactcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttgtaaa |
300 |
Q |
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| T |
35447699 |
ctaaggggctcactcaaagagaatgcattgctttcattgaaatatattttcctgttgtgaaacatacaagtattggagggaatgtatcacttgttgtaaa |
35447798 |
T |
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| Q |
301 |
ggagaatactttgatggataatatatataaagaaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
392 |
Q |
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| T |
35447799 |
ggagaatactttgatggataatatatataaagtaacatgacatcaaatgattagattttgagtactatactaataaagttatggaatatgga |
35447890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 492 - 530
Target Start/End: Original strand, 35447991 - 35448029
Alignment:
| Q |
492 |
tatcccataatcatctacaccatcacacggaagtgttca |
530 |
Q |
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| T |
35447991 |
tatcccataatcacctacaccatcacacggaagtgttca |
35448029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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