View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_low_5 (Length: 482)
Name: NF12905_low_5
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 17504347 - 17503876
Alignment:
| Q |
1 |
cactgatattgcacaataactcaattatta-tctaagaatgaa-----catctacacgttacaataacttatgacggcacatggttttttattttcaaca |
94 |
Q |
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|||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17504347 |
cactgatattgcacaataccccaattattaatctaagaatgaagatatcatctacacgttacaataacttatgacggcacatggttttttattttcaaca |
17504248 |
T |
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| Q |
95 |
acaaaggataaacttagagtcttataaaaaa-tgataaactttagagtgctcgcaaagtattcatttaattaatattttatagtaatatagtaatagaaa |
193 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17504247 |
acaaaggataaacttagagttttataaaaaaatgataaactttagagtgctcgcaaagtattcatttaattaatattttatagtaatatagtaatagaaa |
17504148 |
T |
|
| Q |
194 |
aagtaaaccatgtaatacaattattttaaaaacatttgtaattctaagata-annnnnnnaaatatgagtattatctaaatatcgttttcaaaaaagaca |
292 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17504147 |
aagtaaaccatgtaatacaaatattttaaaaacatttgtaattctaagatatttttttttaaatatgagtattatctaaatatcgttttcaaaaaagaca |
17504048 |
T |
|
| Q |
293 |
aactcttattgagtcaaacaaaaaatacaaaatactattgtttcggttaacattaattaccgaagaactcatacatgagtggagtagacgaaatctgaac |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17504047 |
aactcttattgagtcaaacaaaaaatacaaaatactattgtttcggttaacattaattactgaagaactcatacatgagtggagtagacgaaatctgaac |
17503948 |
T |
|
| Q |
393 |
ttcaatcacaatatttgacctaacaactttagcatttttacaagtcgagttacgggctgttcttgacacatt |
464 |
Q |
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| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
17503947 |
tccaatcacgatatttgacctaacaactttagcatttttacaagtcgagttacgggttgttcttaacacatt |
17503876 |
T |
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