View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12905_low_6 (Length: 464)

Name: NF12905_low_6
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12905_low_6
NF12905_low_6
[»] chr3 (16 HSPs)
chr3 (15-279)||(33216613-33216877)
chr3 (15-279)||(29833270-29833534)
chr3 (15-279)||(12938396-12938660)
chr3 (59-250)||(50650394-50650585)
chr3 (36-250)||(31658799-31659012)
chr3 (189-278)||(20104177-20104266)
chr3 (192-280)||(39833366-39833454)
chr3 (190-275)||(5232804-5232889)
chr3 (190-279)||(53282147-53282236)
chr3 (197-279)||(29703677-29703759)
chr3 (190-278)||(36950292-36950380)
chr3 (36-133)||(20104322-20104419)
chr3 (59-133)||(39833233-39833307)
chr3 (36-133)||(5232946-5233043)
chr3 (222-272)||(48155209-48155259)
chr3 (80-133)||(36950181-36950234)
[»] chr5 (8 HSPs)
chr5 (15-280)||(31482027-31482292)
chr5 (15-278)||(1828408-1828671)
chr5 (15-278)||(40313873-40314136)
chr5 (59-278)||(41413445-41413664)
chr5 (59-281)||(30624857-30625079)
chr5 (192-278)||(24788459-24788545)
chr5 (190-279)||(39884549-39884638)
chr5 (59-125)||(24788326-24788392)
[»] chr8 (8 HSPs)
chr8 (15-278)||(13802638-13802901)
chr8 (190-279)||(3879601-3879690)
chr8 (192-278)||(531539-531625)
chr8 (189-279)||(30945583-30945676)
chr8 (59-183)||(23613574-23613699)
chr8 (59-133)||(30945455-30945527)
chr8 (59-133)||(531684-531758)
chr8 (80-133)||(3879490-3879543)
[»] chr7 (15 HSPs)
chr7 (296-445)||(23172752-23172902)
chr7 (297-445)||(23188725-23188872)
chr7 (80-279)||(29833968-29834167)
chr7 (59-249)||(19436697-19436887)
chr7 (192-278)||(45972278-45972364)
chr7 (189-278)||(29243235-29243324)
chr7 (189-278)||(47327797-47327886)
chr7 (105-250)||(29258411-29258556)
chr7 (206-279)||(34093972-34094045)
chr7 (206-280)||(6442490-6442564)
chr7 (38-126)||(6442633-6442721)
chr7 (59-133)||(45972423-45972497)
chr7 (36-133)||(47327942-47328039)
chr7 (42-122)||(34094118-34094198)
chr7 (59-133)||(29243380-29243452)
[»] chr6 (5 HSPs)
chr6 (15-250)||(33694805-33695039)
chr6 (59-250)||(12938666-12938857)
chr6 (59-235)||(28138042-28138217)
chr6 (99-163)||(14532051-14532115)
chr6 (222-272)||(4488578-4488628)
[»] chr4 (16 HSPs)
chr4 (59-280)||(27292940-27293161)
chr4 (59-283)||(4919006-4919229)
chr4 (36-280)||(42976325-42976568)
chr4 (197-281)||(55919527-55919611)
chr4 (192-279)||(20133264-20133351)
chr4 (190-279)||(15531345-15531434)
chr4 (206-279)||(47031597-47031670)
chr4 (38-126)||(45989591-45989679)
chr4 (206-278)||(45989748-45989820)
chr4 (190-281)||(24228277-24228368)
chr4 (206-279)||(42069184-42069257)
chr4 (42-126)||(47031444-47031528)
chr4 (36-126)||(42069025-42069115)
chr4 (59-133)||(20133410-20133484)
chr4 (59-133)||(55919389-55919463)
chr4 (395-431)||(46702560-46702596)
[»] chr2 (17 HSPs)
chr2 (59-250)||(14096280-14096471)
chr2 (189-279)||(37078801-37078891)
chr2 (192-280)||(17690457-17690545)
chr2 (190-279)||(7089078-7089167)
chr2 (192-273)||(16429724-16429805)
chr2 (192-280)||(14810250-14810337)
chr2 (192-279)||(15330588-15330676)
chr2 (192-279)||(18977221-18977308)
chr2 (190-273)||(33755204-33755287)
chr2 (59-133)||(14810117-14810191)
chr2 (59-133)||(16429864-16429938)
chr2 (59-133)||(15330735-15330809)
chr2 (59-133)||(37261699-37261773)
chr2 (192-279)||(37261832-37261911)
chr2 (36-133)||(37078947-37079044)
chr2 (59-146)||(18977113-18977200)
chr2 (59-125)||(17690612-17690678)
[»] chr1 (9 HSPs)
chr1 (59-250)||(27286188-27286379)
chr1 (36-277)||(39241555-39241793)
chr1 (59-279)||(52385816-52386036)
chr1 (192-278)||(12981376-12981462)
chr1 (192-279)||(45348403-45348490)
chr1 (206-281)||(45325765-45325840)
chr1 (59-133)||(12981521-12981595)
chr1 (59-133)||(45348270-45348344)
chr1 (38-126)||(45325616-45325704)
[»] scaffold0166 (2 HSPs)
scaffold0166 (192-278)||(30842-30928)
scaffold0166 (59-125)||(30709-30775)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 33216613 - 33216877
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||||||    
T  33216613 gagatgaataagtgatagggtggagagagaatttaaattagacaaaaaattatgcgtagatgctgtaccataataccatagaggccaaacaaatctaacc 33216712  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  33216713 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttaggacgtgtcatcacttaaaatct 33216812  T
Q  215 gattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33216813 gattggctcattcaaacgacttcaccgaagaagtcattttaatgacttcatcgtagaagctccct 33216877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 29833534 - 29833270
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| |||| |||||||||||||||||    
T  29833534 gagatgaataagtgatagggtggagagagaattgaaattagacaaacaattatgtgaagatggtgtaccataataccatagaaaccaaacaaatctaacc 29833435  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatct 214  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  29833434 attaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatct 29833335  T
Q  215 gattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||| ||||||||||||||||||| || ||||||||||| ||||||| |||||||||||||||    
T  29833334 gattggttcattcaaacgacttcaccaaagaagtcattttactgacttcttcgtagaagctccct 29833270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 12938660 - 12938396
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    |||||| || |||||||  | ||||||||| ||| ||||| |  |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| ||||||    
T  12938660 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 12938561  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatct 214  Q
     |||||||| |||| ||||  |||| | ||||||||||||| ||||||||||||||||||||||||||| | || |||||| ||||||  ||| ||||||    
T  12938560 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatct 12938461  T
Q  215 gattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    ||||||  ||||||||||||||||||||| |||||||||    ||||||||| ||||||||||||    
T  12938460 gattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccct 12938396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 50650394 - 50650585
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  50650394 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 50650493  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 250  Q
    |||||||||||||||| ||||||||   || |||||| ||||||  ||| |||||||||||||| | | ||||||||| |||||||||||||    
T  50650494 caagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgactttaccgaaaaagtca 50650585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 36 - 250
Target Start/End: Original strand, 31658799 - 31659012
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 135  Q
    |||||||||||||| ||||||  |||||| ||||||||||| ||||||| |||| | ||||||||||  |||||||||| |||||||||| ||  |||      
T  31658799 ggagagagaattgatattagaagaaaaatcatgtgtagatggtgtaccacaataacatagagaccaagtaaatctaaccgttaagatcataaaagaaact 31658898  T
Q  136 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 235  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| ||  ||| | |||  ||||||| ||| |||||||||||| | | | ||||||||    
T  31658899 tgtctatggtgggacttatggagcaagtgatccatattagaatttatc-ctacatgtgatgtgtcatctcttgaaatctgattggttgaattaaacgact 31658997  T
Q  236 tcaccgaaaaagtca 250  Q
     ||||||| ||||||    
T  31658998 gcaccgaagaagtca 31659012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 20104266 - 20104177
Alignment:
Q  189 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    ||||||| |||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||    
T  20104266 ttctgacgtgtcatcacttaaaatctgattggcctattcaaacgatttcaccgaaaaagtcattttcctgacttcttcgtagaagctccc 20104177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 39833366 - 39833454
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 280  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||||    
T  39833366 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctcccta 39833454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 5232889 - 5232804
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagct 275  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||  ||||||| |||||||||||    
T  5232889 tctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagct 5232804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 53282236 - 53282147
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||| || ||||||||||||    
T  53282236 tctgacgtgtcatcacttgaaatctgattggcccattcaaacgacttcaccgaagaagtcatttttctgacttcttcatagaagctccct 53282147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 279
Target Start/End: Original strand, 29703677 - 29703759
Alignment:
Q  197 tgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||    
T  29703677 tgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaagctccct 29703759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 278
Target Start/End: Original strand, 36950292 - 36950380
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||  ||||||| || |||||||||||    
T  36950292 tctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaagctccc 36950380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 20104419 - 20104322
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  |||||||||||||||||||||||| ||||    
T  20104419 ggagagagaattggtactagaagaaaattaatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaaccattaagatcatgaaataaa 20104322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 39833233 - 39833307
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  39833233 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 39833307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 5233043 - 5232946
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  ||||||||| |||||||||||||| ||||    
T  5233043 ggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 5232946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 48155209 - 48155259
Alignment:
Q  222 tcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaa 272  Q
    |||||| || ||||||||| ||||||||||||||| ||||||| |||||||    
T  48155209 tcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaa 48155259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 36950181 - 36950234
Alignment:
Q  80 taccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    ||||| |||| | ||||||||||  |||||||||||||||||||||||| ||||    
T  36950181 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 36950234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 15 - 280
Target Start/End: Original strand, 31482027 - 31482292
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  31482027 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatggtgtaccataataccatagagaccaaacaaatctaacc 31482126  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |    
T  31482127 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgaagtgtcatcacttaaaattt 31482226  T
Q  215 gattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 280  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||    
T  31482227 gattggctcattcaaacgactttaccgaagaagtcattttactgacttcttcgtagaagctcccta 31482292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 1828671 - 1828408
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    |||||| || |||||||  | ||||||||| ||| ||||| |  |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| ||||||    
T  1828671 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 1828572  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatct 214  Q
     |||||||| |||| ||||  |||| | ||||||||||||| ||||||||||||||||||||||||||||| || |||||| ||||||  ||| ||||||    
T  1828571 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattataatttgtcataacatctgacgtgtcatggcttgaaatct 1828472  T
Q  215 gattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    ||||||  ||||||||||||||||||||| |||||||||    ||||||||| |||||||||||    
T  1828471 gattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 1828408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 40314136 - 40313873
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    |||||| || |||||||  | ||||||||| ||| ||||| |  |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| ||||||    
T  40314136 gagatgcatgagtgataaagaggagagagatttggaattataagaaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaacc 40314037  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatct 214  Q
     |||||||| |||| ||||  |||| | ||||||||||||| ||||||||||||||||| ||||||||| | || |||||| ||||||  ||| ||||||    
T  40314036 gttaagatcttgaaataaacttgtccacggtggaacatatgaagcaagtgatccatattgtaatttgtcctaacatctgacgtgtcatggcttgaaatct 40313937  T
Q  215 gattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    ||||||  ||||||||||||||||||||| |||||||||    ||||||||| |||||||||||    
T  40313936 gattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccc 40313873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 59 - 278
Target Start/End: Original strand, 41413445 - 41413664
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||| | | ||||||| |||| | |||| |||||  ||| |||||| |||||||| |||| ||||  |||| | ||||||||||||| ||    
T  41413445 aaaaatcatgtgtaaagggtgtaccacaataacatagacaccaagtaaacctaaccgttaagatcttgaaataaacttgtccacggtggaacatatgaag 41413544  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 258  Q
    ||||||||||||||||||||||||| | || |||||| ||||||  ||| ||||||||||||  ||||||||||||||||||||| |||||||||    |    
T  41413545 caagtgatccatattataatttgtcctaacatctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccg 41413644  T
Q  259 acttcatcgtagaagctccc 278  Q
    |||||||| |||||||||||    
T  41413645 acttcatcatagaagctccc 41413664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 59 - 281
Target Start/End: Complemental strand, 30625079 - 30624857
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||| ||  |||| ||||  |||||||||||||||||||| ||    
T  30625079 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaaaattttgaaataaacttgtctatggtggaacatatgaag 30624980  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 258  Q
    |||||||||||||||| ||||| ||   || |||||| |||||| |||| |||||||||||| | | | ||||||||||||  ||||||||| |||   |    
T  30624979 caagtgatccatattaaaatttatcccaacatctgacgtgtcatgacttgaaatctgattggttgaattaaacgacttcactaaaaaagtcaatttctcg 30624880  T
Q  259 acttcatcgtagaagctccctat 281  Q
    ||||| || ||||||||||||||    
T  30624879 acttcttcatagaagctccctat 30624857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 24788459 - 24788545
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  24788459 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 24788545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 39884638 - 39884549
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||  |||||||  ||||||| ||||||    
T  39884638 tctgacgtgtcatcacttgaaatctgattggtccattcaaacgacttcaccgaaaaagtcatttttctgacttctccgtagaaactccct 39884549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 24788326 - 24788392
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat 125  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||    
T  24788326 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 24788392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 13802638 - 13802901
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  13802638 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatggtgtaccataatacgatagagaccaaacaaatctaacc 13802737  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatct 214  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  13802738 attaagatcatcaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtccttacttctgacgtgtcatcacttaaaatct 13802837  T
Q  215 gattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  13802838 gattggttcattcaaacgactttaccgaaaaagtcattttactgacttcttcgtagaagctccc 13802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 3879601 - 3879690
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||||||    
T  3879601 tctgacgtgtcatcacttgaaatctaattggctcattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcgtagaagctccct 3879690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 531625 - 531539
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  531625 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 531539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 30945583 - 30945676
Alignment:
Q  189 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcacc---gaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    ||||||| |||||||| |||||||||||||| | ||||||||||||||||||   ||| ||||||||||  |||||||||| ||||||||||||    
T  30945583 ttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagaagtcattttcctgacttcatcatagaagctccct 30945676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 183
Target Start/End: Complemental strand, 23613699 - 23613574
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat-gaagtaaatctgtctatggtggaacatatgga 157  Q
    |||||| ||||||||| | ||||||| |||| | | |||||||||||||||||||| |||||||| |  ||  |||  | || |||||||||||||| ||    
T  23613699 aaaaatcatgtgtagaggctgtaccacaatatcatggagaccaaacaaatctaaccgttaagatcttaaaaaaaaagttatccatggtggaacatattga 23613600  T
Q  158 gcaagtgatccatattataatttgtc 183  Q
    ||||||| ||||||||| ||||||||    
T  23613599 gcaagtggtccatattagaatttgtc 23613574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 30945455 - 30945527
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| ||||   |||||| |||  |||||||||||||||||||||||| ||||    
T  30945455 aaaaatcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaa 30945527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 531758 - 531684
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| || ||||| ||||    
T  531758 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaattatgaaataaa 531684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 3879490 - 3879543
Alignment:
Q  80 taccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    ||||| |||| | ||||||||||  |||||||||||||||||||||||| ||||    
T  3879490 taccacaataacatagagaccaagtaaatctaaccattaagatcatgaaataaa 3879543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 296 - 445
Target Start/End: Original strand, 23172752 - 23172902
Alignment:
Q  296 cgcaacaacataattaacaaatgaaacattatccgcaatctaacaacataaataaaaaatatataattaacagaatcaaggaaacaatgtcactagtata 395  Q
    |||||||||||| |||||||||||||| | ||| |||||||||||||||||||| || | |||||||||||||||||||  |||||||||||||||||||    
T  23172752 cgcaacaacatagttaacaaatgaaacctcatcagcaatctaacaacataaatacaataaatataattaacagaatcaaacaaacaatgtcactagtata 23172851  T
Q  396 aattcaacaacattgaacaaatctcaaaataaa-cccccatcatacaaaaa 445  Q
    |||| | ||||||| |||||||||||||||||| |||||||||||||||||    
T  23172852 aattaagcaacatttaacaaatctcaaaataaatcccccatcatacaaaaa 23172902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 297 - 445
Target Start/End: Original strand, 23188725 - 23188872
Alignment:
Q  297 gcaacaacataattaacaaatgaaacattatccgcaatctaacaacataaataaaaaatatataattaacagaatcaaggaaacaatgtcactagtataa 396  Q
    |||||||||||||||||||| | ||||| ||  || ||||||| |  ||||||||||||||||||||| |||||||||| |||||||||| |||||||||    
T  23188725 gcaacaacataattaacaaacgtaacatcattagcgatctaacta--taaataaaaaatatataattagcagaatcaagcaaacaatgtcgctagtataa 23188822  T
Q  397 attcaacaacattgaacaaatctcaaaataaa-cccccatcatacaaaaa 445  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||    
T  23188823 atccaacaacattgaacaaatctcaaaataaatcccccatcatacaaaaa 23188872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 29833968 - 29834167
Alignment:
Q  80 taccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatt 179  Q
    ||||| |||| | |||||||||||||||||||||  |||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||||| | ||    
T  29833968 taccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaacttgtctatggtggaacatatgaagcaagtgatccatattagagtt 29834067  T
Q  180 tgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    ||||   || |||||||||||||  ||| |||||||||||||| | | ||||||||| ||| ||||||||| ||    |||||| |||||||||||||||    
T  29834068 tgtcccaacatctgacatgtcatggcttgaaatctgattggctgaattaaacgactttaccaaaaaagtcaattccccgacttcttcgtagaagctccct 29834167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 249
Target Start/End: Complemental strand, 19436887 - 19436697
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||| | | ||||||| |||| | |||||||||||||||||||||  |||||||| |||| ||||  |||||||||||||||||||| |     
T  19436887 aaaaatcatgtgtatagggtgtaccacaataacatagagaccaaacaaatctaactgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 19436788  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtc 249  Q
    |||||||||||||||| ||||||||   || | |||| | ||||  ||| |||||||||||||| | | ||||||||||||||||||||||    
T  19436787 caagtgatccatattagaatttgtcccaacatatgacgtatcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtc 19436697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 45972364 - 45972278
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  45972364 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 45972278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 29243324 - 29243235
Alignment:
Q  189 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    ||||||| |||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  29243324 ttctgacgtgtcatcatttaaaatctgattgacccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 29243235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 47327886 - 47327797
Alignment:
Q  189 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    ||||||| ||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||||  ||||||| ||||||||||||||    
T  47327886 ttctgacgtgtcatcgcttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccc 47327797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 29258556 - 29258411
Alignment:
Q  105 aaatctaaccattaa-gatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgtc-attacttctgacatgtcat 202  Q
    |||||||||| |||| ||| ||||| ||||  |||| | ||||||||| |||||||||||||||||| ||| |||||||| ||||  |||||| ||||||    
T  29258556 aaatctaaccgttaaagattatgaaataaacttgtccacggtggaacacatggagcaagtgatccatgttagaatttgtccatta--tctgacgtgtcat 29258459  T
Q  203 cacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 250  Q
    ||||| ||||||||||||| ||||||||| ||| || |||| ||||||    
T  29258458 cacttgaaatctgattggcccattcaaacaactgcatcgaagaagtca 29258411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 34094045 - 34093972
Alignment:
Q  206 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||  ||||||| |||||||||||||||    
T  34094045 ttaaaatctgattggcccattcaaacgactgcaccgaagaagtcatttttctgacttcttcgtagaagctccct 34093972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 6442564 - 6442490
Alignment:
Q  206 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 280  Q
    |||||||||||||||| ||||||||||||| |||| || ||||||||||  ||||||| ||||||||||||||||    
T  6442564 ttaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagctcccta 6442490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 6442721 - 6442633
Alignment:
Q  38 agagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 126  Q
    |||||||||||||||||||  |||||| ||||||||||| | ||||| |||| | ||||||||||  |||||||||  |||||||||||    
T  6442721 agagagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaacagttaagatcatg 6442633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 45972497 - 45972423
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  45972497 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 45972423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 47328039 - 47327942
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  ||||||||| |||||||||||||| ||||    
T  47328039 ggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 47327942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 34094198 - 34094118
Alignment:
Q  42 agaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagat 122  Q
    |||||||||||||||  |||||| ||||||||||| | ||||| |||| | |||||| |||  |||||||||| |||||||    
T  34094198 agaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagat 34094118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 29243452 - 29243380
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| ||||   |||||| |||  |||||||||||||||||||||||| ||||    
T  29243452 aaaaatcatgtgtagatggtgtaccacaataa--tagagatcaagtaaatctaaccattaagatcatgaaataaa 29243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 33695039 - 33694805
Alignment:
Q  15 gagatgaataagtgatagggtggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaacc 114  Q
    ||||||||| |||||||  |  ||||||||| || ||||| |  |||||| || |||||| | ||||||| ||||   ||||| ||||| |||||||||     
T  33695039 gagatgaatgagtgataaagaagagagagaaatggaattataagaaaaatcatatgtagagggtgtaccacaataatatagaggccaaataaatctaact 33694940  T
Q  115 attaagatcatgaagtaaatctgtctatggtggaacatatggagcaagtgatccatattataatttgt-cattacttctgacatgtcatcacttaaaatc 213  Q
     ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||| | |||||  ||| || |||||||||||||||||    
T  33694939 gttaagatcatgaaataaatttgtctatgatggaacatatggagcaagtgatccatattaaaatttttccatta--tctaacgtgtcatcacttaaaatc 33694842  T
Q  214 tgattggctcattcaaacgacttcaccgaaaaagtca 250  Q
    |||||||  ||||||||||||||||||||||||||||    
T  33694841 tgattggtccattcaaacgacttcaccgaaaaagtca 33694805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 12938857 - 12938666
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||  |||| ||||  |||||||||||||||||||| ||    
T  12938857 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaacttgtctatggtggaacatatgaag 12938758  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 250  Q
    |||||||||||||||| ||||||||   || |||||| ||||||| |||||||||||||||| | | | ||||||||||||  |||||||||    
T  12938757 caagtgatccatattaaaatttgtcccaacatctgacgtgtcatcgcttaaaatctgattggttgaattaaacgacttcactaaaaaagtca 12938666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 59 - 235
Target Start/End: Original strand, 28138042 - 28138217
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| |||||||||||  |||||| ||||   ||||||||||  |||||||||| ||||||||||||| ||||  |||| ||| ||| ||||||||||    
T  28138042 aaaaatcatgtgtagatgacgtaccacaataatatagagaccaagtaaatctaacctttaagatcatgaaataaacttgtccatgatgggacatatggag 28138141  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 235  Q
    |||||| ||||||||| ||||||||  ||| |||||| |||||| |||| |||| ||||||||| | | ||||||||    
T  28138142 caagtggtccatattaaaatttgtc-ctacatctgacgtgtcatgacttgaaatttgattggctgaattaaacgact 28138217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 14532051 - 14532115
Alignment:
Q  99 ccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggagcaagt 163  Q
    ||||||||||||||||||||||||| ||||||||| ||||| |||||| ||||||| ||||||||    
T  14532051 ccaaacaaatctaaccattaagatcgtgaagtaaacctgtccatggtgaaacatatagagcaagt 14532115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Original strand, 4488578 - 4488628
Alignment:
Q  222 tcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaa 272  Q
    |||||| || ||||||||| ||||||||||||||| ||||||| |||||||    
T  4488578 tcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaa 4488628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 59 - 280
Target Start/End: Complemental strand, 27293161 - 27292940
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||| |||| ||||  |||||||||||||||||||| |     
T  27293161 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagatcttgaaataaacttgtctatggtggaacatatgaaa 27293062  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 258  Q
    |||||||||||||||| ||||||||   || | |||| ||||||  ||| |||||||||||||| | | ||||||||||||||||||||||| ||    |    
T  27293061 caagtgatccatattagaatttgtcccaacatatgacgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaattccccg 27292962  T
Q  259 acttcatcgtagaagctcccta 280  Q
    ||||| || |||||||||||||    
T  27292961 acttcttcatagaagctcccta 27292940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 59 - 283
Target Start/End: Complemental strand, 4919229 - 4919006
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| |||||||||   ||||||| |||| | ||||||||||||||||||||||||||||||| |||| ||||  |||||||||||||||||||| |     
T  4919229 aaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaaccattaagatcttgaaataaacttgtctatggtggaacatatgaaa 4919130  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 258  Q
    |||||||||||||||| ||||||||   || |||||| ||||||  ||| |||||||||||||| | |  |||||||||||||||||||||| ||    |    
T  4919129 caagtgatccatattagaatttgtcccaacatctgacgtgtcatggcttgaaatctgattggctgaat-taacgacttcaccgaaaaagtcaattccccg 4919031  T
Q  259 acttcatcgtagaagctccctataa 283  Q
    ||||| || ||||||||||||||||    
T  4919030 acttcttcatagaagctccctataa 4919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 36 - 280
Target Start/End: Complemental strand, 42976568 - 42976325
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 135  Q
    |||||||||||||| | ||||  |||||| ||||||||||| ||||||| | || | ||||||||||  |||||||||| |||||||||| ||  |||      
T  42976568 ggagagagaattgatactagaagaaaaatcatgtgtagatggtgtaccacattaacatagagaccaagtaaatctaaccgttaagatcataaaagaaact 42976469  T
Q  136 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgact 235  Q
    |||||||||||| || ||||||||||||||||||||||| ||||| |   ||| | |||| ||||||| ||| |||||||||||| | | | ||||||||    
T  42976468 tgtctatggtgggacttatggagcaagtgatccatattaaaatttat-tctacatgtgacgtgtcatctcttgaaatctgattggttgaattaaacgact 42976370  T
Q  236 tcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 280  Q
     || |||| |||||| ||    |||||| || |||||||||||||    
T  42976369 gcatcgaagaagtcaattgtccgacttcttcatagaagctcccta 42976325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 197 - 281
Target Start/End: Original strand, 55919527 - 55919611
Alignment:
Q  197 tgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccctat 281  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||||    
T  55919527 tgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccctat 55919611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 20133351 - 20133264
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||||    
T  20133351 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccct 20133264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 15531345 - 15531434
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||| | ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||  |||||||  ||||||||||||||    
T  15531345 tctgacgtatcatcacttgaaatctgattggttcattcaaacgacttcactgaaaaagtcatttttctgacttctccgtagaagctccct 15531434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 47031597 - 47031670
Alignment:
Q  206 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||||||  ||||||| |||||||||||||||    
T  47031597 ttaaaatctgattggcccattcaaacgactgcaccgaagaagtcattttcctgacttcttcgtagaagctccct 47031670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 45989591 - 45989679
Alignment:
Q  38 agagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 126  Q
    |||||||||||||||||||  |||||| ||||||||||| | ||||| |||| | ||||||||||  |||||||||| |||||||||||    
T  45989591 agagagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagaccaattaaatctaaccgttaagatcatg 45989679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 278
Target Start/End: Original strand, 45989748 - 45989820
Alignment:
Q  206 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||||||||||||||| ||||||||||||| |||| || ||||||||||  ||||||| ||||||||||||||    
T  45989748 ttaaaatctgattggcccattcaaacgactgcaccaaagaagtcattttcctgacttcttcgtagaagctccc 45989820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 24228277 - 24228368
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccctat 281  Q
    |||||| ||||||  ||| ||||||||||||  ||||||||||||||||||||| |||||||||    ||||||||| ||||||||||||||    
T  24228277 tctgacgtgtcatggcttgaaatctgattggtccattcaaacgacttcaccgaagaagtcatttacccgacttcatcatagaagctccctat 24228368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 279
Target Start/End: Original strand, 42069184 - 42069257
Alignment:
Q  206 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||||||||||| | ||||||||||||| ||||||| ||||||||||  ||||||| || ||||||||||||    
T  42069184 ttaaaatctgattgacccattcaaacgactgcaccgaagaagtcattttcctgacttcttcatagaagctccct 42069257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 47031444 - 47031528
Alignment:
Q  42 agaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 126  Q
    |||||||||||||||  |||||| ||||||||||| | ||||| |||| | |||||| |||  ||||||||||||||||||||||    
T  47031444 agaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccattaagatcatg 47031528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 42069025 - 42069115
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 126  Q
    ||||| |||||||||||||||  |||||| ||||||||||| | ||||| |||| | |||||| |||  |||||||||| |||||||||||    
T  42069025 ggagaaagaattgaaattagaagaaaaatcatgtgtagatggtataccacaataacatagagatcaattaaatctaaccgttaagatcatg 42069115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 20133484 - 20133410
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  20133484 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 20133410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 55919389 - 55919463
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||| ||||| |||||||| ||||    
T  55919389 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaactattaaaatcatgaaataaa 55919463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 46702560 - 46702596
Alignment:
Q  395 aaattcaacaacattgaacaaatctcaaaataaaccc 431  Q
    |||| |||||||||| |||||||||||||||||||||    
T  46702560 aaatccaacaacatttaacaaatctcaaaataaaccc 46702596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 14096471 - 14096280
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| |||||||||   ||||||| |||| | |||||||||||||||||||||  |||||||| |||| ||||  |||||||||||||||||||| |     
T  14096471 aaaaatcatgtgtagagcgtgtaccacaatatcatagagaccaaacaaatctaacggttaagatcttgaaataaacttgtctatggtggaacatatgaaa 14096372  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 250  Q
    |||||||||||||||| ||||||||   || |||||| ||||||  ||| |||||||||||||| | | |||||||||||||||||||||||    
T  14096371 caagtgatccatattagaatttgtcccaacatctgacgtgtcatgtcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 14096280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 37078891 - 37078801
Alignment:
Q  189 ttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||  ||||||| |||||||||||||||    
T  37078891 ttctgacgtgtcatcacttaaaatctgattggcccattcagacgacttcaccgaagaagtcattttcctgacttcttcgtagaagctccct 37078801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 280
Target Start/End: Complemental strand, 17690545 - 17690457
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 280  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||| |||||| |||||||||||||    
T  17690545 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgagttcatcatagaagctcccta 17690457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 279
Target Start/End: Complemental strand, 7089167 - 7089078
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||||| ||||||||||| |||||| |||||| |||||||||||||||| |||||||||| ||||  ||||||| || ||||||||||||    
T  7089167 tctgacgtgtcatcacttgaaatctaattggcccattcaaacgacttcatcgaaaaagtcgtttttctgacttcttcatagaagctccct 7089078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 16429805 - 16429724
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaag 273  Q
    |||| |||||||| ||||||||||||||||  |||||||||||||||||||| ||||||||||  |||||||||| ||||||    
T  16429805 tgacgtgtcatcatttaaaatctgattggcctattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaag 16429724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 14810250 - 14810337
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctcccta 280  Q
    |||| |||||||| |||||||||||||||| |||||||||||| ||||| || ||||||||||  |||||||||| |||||||||||||    
T  14810250 tgacgtgtcatcatttaaaatctgattggcccattcaaacgac-tcaccaaagaagtcattttcctgacttcatcatagaagctcccta 14810337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 279
Target Start/End: Complemental strand, 15330676 - 15330588
Alignment:
Q  192 tgacatgtcatcacttaaaat-ctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| || |||||||||    
T  15330676 tgacgtgtcatcatttaaaatactgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcataaaagctccct 15330588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 18977221 - 18977308
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||| |||||||||||||||||||||||||| | | ||||||||||| |||| ||||||||||  ||||||| || ||||||||||||    
T  18977221 tgacgtgtcatcacttaaaatctgattggctgaattaaacgacttcatcgaagaagtcattttcctgacttcttcatagaagctccct 18977308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 33755204 - 33755287
Alignment:
Q  190 tctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaag 273  Q
    |||||| ||||||||||| |||||| |||| | ||||||||||||||||||||||||||| ||||  ||||||| || ||||||    
T  33755204 tctgacgtgtcatcacttgaaatctaattgacccattcaaacgacttcaccgaaaaagtcgtttttctgacttcttcatagaag 33755287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 14810117 - 14810191
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||| ||||||||||||||| |||||||| ||||    
T  14810117 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaaataaatctaaccattaaaatcatgaaataaa 14810191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 16429938 - 16429864
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| |||||||||||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  16429938 aaaaatcatgtgtagatggtgtaccataataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 16429864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 15330809 - 15330735
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  15330809 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 15330735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 37261699 - 37261773
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  37261699 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 37261773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 37261832 - 37261911
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||| |||||||| ||||||||||||||||  |||||||||||||        |||||||||| ||||||||||| ||||||||||||    
T  37261832 tgacgtgtcatcatttaaaatctgattggcctattcaaacgactt--------aagtcattttcatgacttcatcatagaagctccct 37261911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 37079044 - 37078947
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||||||||||  | ||||  |||| | ||||||||||||||||||| |||| | || ||| |||  ||||||||| |||||||||||||| ||||    
T  37079044 ggagagagaattggtactagaagaaaattcatgtgtagatgttgtaccacaataacataaagatcaagtaaatctaactattaagatcatgaaataaa 37078947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 18977113 - 18977200
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtg 146  Q
    |||| ||||||||||||| ||||||| |||| | ||||||| ||  |||||||||  ||||||||||||| ||||  |||| ||||||    
T  18977113 aaaagttatgtgtagatggtgtaccacaataacatagagactaagtaaatctaactgttaagatcatgaaataaacttgtccatggtg 18977200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 17690678 - 17690612
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat 125  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||    
T  17690678 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 17690612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 59 - 250
Target Start/End: Complemental strand, 27286379 - 27286188
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||||| | ||||||| |||| | |||||||||||||||||||||| |||||||  |||| ||||  |||||||||||||||||||| ||    
T  27286379 aaaaatcatgtgtagagggtgtaccacaataacatagagaccaaacaaatctaaccgttaagattttgaaataaacttgtctatggtggaacatatgaag 27286280  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtca 250  Q
    |||||||||||||||| || || ||   || |||||| ||||||  ||| |||||||||||||| | | |||||||||||||||||||||||    
T  27286279 caagtgatccatattaaaaattttcccaacatctgacgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtca 27286188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 36 - 277
Target Start/End: Complemental strand, 39241793 - 39241555
Alignment:
Q  36 ggagagagaattgaaattagacaaaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatc 135  Q
    ||||||||||||| |||||||  |||||| ||||||||||| ||||||| |||| |  |||   ||   |||||||||| ||||||||||||| ||||      
T  39241793 ggagagagaattgtaattagaagaaaaatcatgtgtagatggtgtaccacaataacaaaga---caggtaaatctaaccgttaagatcatgaaataaact 39241697  T
Q  136 tgtctatggtggaacatatggagcaagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattg-gctcattcaaacgac 234  Q
    |||||||||||||||||||| |||||||||| ||||||| ||||||||   || |||||| ||| |||||||||||||||||||  | ||||||||||||    
T  39241696 tgtctatggtggaacatatgaagcaagtgat-catattagaatttgtctcaacatctgacgtgttatcacttaaaatctgattgaccccattcaaacgac 39241598  T
Q  235 ttcaccgaaaaagtcattttaatgacttcatcgtagaagctcc 277  Q
    |||| |||| ||||||||||  | ||||| || ||||||||||    
T  39241597 ttcatcgaagaagtcattttcctaacttcttcatagaagctcc 39241555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 59 - 279
Target Start/End: Original strand, 52385816 - 52386036
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaatctgtctatggtggaacatatggag 158  Q
    |||||| ||||||||| | ||||||| |||| | |||||| ||||||||||||||| | |||||| |||| ||||  |||||||||||||||||||| |     
T  52385816 aaaaatcatgtgtagagggtgtaccacaataacatagagatcaaacaaatctaaccgtaaagatcttgaaataaacttgtctatggtggaacatatgaaa 52385915  T
Q  159 caagtgatccatattataatttgtcattacttctgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatg 258  Q
    || ||||||||| ||| ||||||||   || | |||  ||||||  ||| |||||||||||||| | | ||||||||||||||||||||||| |||        
T  52385916 cacgtgatccattttagaatttgtcccaacatatgatgtgtcatggcttgaaatctgattggctgaattaaacgacttcaccgaaaaagtcaatttccca 52386015  T
Q  259 acttcatcgtagaagctccct 279  Q
    ||||| || ||||||||||||    
T  52386016 acttcttcatagaagctccct 52386036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 12981462 - 12981376
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  12981462 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 12981376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 192 - 279
Target Start/End: Original strand, 45348403 - 45348490
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccct 279  Q
    |||| |||||||| |||||||||||||| |  |||||||||||||||||||| || |||||||  |||||||||| ||||||||||||    
T  45348403 tgacgtgtcatcatttaaaatctgattgacctattcaaacgacttcaccgaagaaatcattttcctgacttcatcatagaagctccct 45348490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 281
Target Start/End: Original strand, 45325765 - 45325840
Alignment:
Q  206 ttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccctat 281  Q
    |||||||||||||||| ||||||||||||| ||| ||| ||||||||||  ||||||| | ||| |||||||||||    
T  45325765 ttaaaatctgattggcccattcaaacgactgcactgaagaagtcattttcctgacttctttgtataagctccctat 45325840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 12981595 - 12981521
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  12981595 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 12981521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 45348270 - 45348344
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatgaagtaaa 133  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||||| ||||    
T  45348270 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcatgaaataaa 45348344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 45325616 - 45325704
Alignment:
Q  38 agagagaattgaaattagaca-aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcatg 126  Q
    ||||||||||||||||| ||| |||||| ||||||||||| | ||||| |||| | ||||||| ||  |||||||||| |||||||||||    
T  45325616 agagagaattgaaatta-acagaaaaatcatgtgtagatggtataccacaataacatagagactaattaaatctaaccgttaagatcatg 45325704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 30842 - 30928
Alignment:
Q  192 tgacatgtcatcacttaaaatctgattggctcattcaaacgacttcaccgaaaaagtcattttaatgacttcatcgtagaagctccc 278  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||||||| |||||||||||    
T  30842 tgacgtgtcatcatttaaaatctgattggcccattcaaacgacttcaccgaagaagtcattttcctgacttcatcatagaagctccc 30928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 30709 - 30775
Alignment:
Q  59 aaaaattatgtgtagatgttgtaccataataccgtagagaccaaacaaatctaaccattaagatcat 125  Q
    |||||| ||||||||||| ||||||| |||| | |||||| |||  ||||||||||||||| |||||    
T  30709 aaaaatcatgtgtagatggtgtaccacaataacatagagatcaagtaaatctaaccattaaaatcat 30775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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