View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_low_8 (Length: 402)
Name: NF12905_low_8
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 20 - 392
Target Start/End: Complemental strand, 42483114 - 42482742
Alignment:
| Q |
20 |
ctctttgctttgtatacaattcttttaatttgaggcaactttgtaccaaatacttgacatcatcacattactttatgtgtatatatcacaatcaccggat |
119 |
Q |
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| T |
42483114 |
ctctttgctttgtatacaattcttttaatttgaggcaactttgtaccaaatacttgacatcatcacattactttatgtgtatatatcacaatcaccgcat |
42483015 |
T |
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| Q |
120 |
agaaaattagcttataattaccaaaaagaacaaaacattaagatgggatgtgaattgtcccaagtagttagtttatagttggtgaaatgttaaataagtg |
219 |
Q |
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| T |
42483014 |
agaaaattagcttataattaccaaaaagaacaaaacattaagatgggatgtgaattgtcccaagtagttagtttatagttggtgaaatattaaataagtg |
42482915 |
T |
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| Q |
220 |
tagagagttttttggtgaaatctttatatttataactttcatatacaagcctcaaactcctaagctcttttttgaaggaaaactcctaacctcatctact |
319 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482914 |
tagagagttttttggtgaaatctttatattaataactttcatatacaagcctcaaactcctaagctcttttttgaaggaaaactcctaacctcatctact |
42482815 |
T |
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| Q |
320 |
aaccctcttagcatgtgaatttggactaaattttgtggacttgcataaactgacagtataagtataagcataa |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
42482814 |
aaccctcttagcatgtgaatttggactaaattttgtgggcttgcataaactgacagtataagtataagtataa |
42482742 |
T |
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