View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12905_low_9 (Length: 381)
Name: NF12905_low_9
Description: NF12905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12905_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Complemental strand, 34259731 - 34259363
Alignment:
| Q |
13 |
atactaatatgatatatttacataatcttgtgtgtaaaattcaggtacctacttgggaaactttcatctttgaacttgaagggacttaaccatcaagaaa |
112 |
Q |
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| T |
34259731 |
atactaatatgatatatttacataatcttgtgtgtaaaattcaggtacctacttgggaaactttcatctttgaacttgaagggacttaaccatcaagaaa |
34259632 |
T |
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| Q |
113 |
aacttgcattctggataaatacttacaattcttctattctgaatgtaagacacttttctgccacacaggtttactacacatataattgcaatgcaggact |
212 |
Q |
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| T |
34259631 |
aacttgcattctggataaatacttacaattcttctattctgaatgtaagacacttttctgccacacaggtttactacatatataattacaatgcaggact |
34259532 |
T |
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| Q |
213 |
aaagagtttggtctattagttctacatttgaatttgatgaaaataatgttttaaattttaaaaaccgaaccaaacattgaaccgtaagatttttggatca |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34259531 |
aaagagtttggtctattagttctacatttgaaattgatgaaaataatgttttaaattttaaaaaccgaaccaaacattgaaccgtaagatttttagatca |
34259432 |
T |
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| Q |
313 |
tagttcaaccgccttaaacttctcaaaccaggaagaaaccactatcgaaccaccaaattaactgaatgg |
381 |
Q |
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| T |
34259431 |
tagttcaaccgccttaaacttctcgaaccgggaagaaactactatcgaaccaccaaattaactgaatgg |
34259363 |
T |
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Back To:
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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 6566586 - 6566690
Alignment:
| Q |
65 |
ttgggaaactttcatctttgaacttgaagggacttaaccatcaagaaaaacttgcattctggataaatacttacaattcttctattctgaatgtaagaca |
164 |
Q |
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||||||||||| | ||| ||||||||||||| |||| ||||| || ||||||||||| |||||||| ||||||||||| | ||| ||||||||||| | |
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| T |
6566586 |
ttgggaaacttgcctctgtgaacttgaagggtcttactcatcaggagaaacttgcattttggataaacacttacaattcatgtatgatgaatgtaagata |
6566685 |
T |
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| Q |
165 |
ctttt |
169 |
Q |
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||||| |
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| T |
6566686 |
ctttt |
6566690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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