View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12906_high_4 (Length: 296)
Name: NF12906_high_4
Description: NF12906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12906_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 279
Target Start/End: Complemental strand, 51044111 - 51043843
Alignment:
| Q |
12 |
atgaagcttataaacttctaacaatcacaaatatgtgatgtaaaaagtttcaaataattgttactgaatttgaagtgatgcatgaaggaagaaacataga |
111 |
Q |
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| T |
51044111 |
atgaagcttataaacttctaacaatcacaaatatgtgatgtaaaaagtttcaaataattgttactgaatttgaagtgatgcatgaaggaagaaacataga |
51044012 |
T |
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| Q |
112 |
atttgagtgtgtttgaaagtacttgttaagcttcaaaagcagccacctcttgagagtgactcttgattaggaaacaaaccaatttaatcatatgattgtc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51044011 |
atttgagtgtgtttgaaagtacttgttaagcttcaaaagcagccacctcttgagagtgactcttgattaggaaacaaaccaatttaatcatatgattgtc |
51043912 |
T |
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| Q |
212 |
aaagtttcacatgaagagagagctg-nnnnnnnattttgttacatcagctagacaacaaaggagatgtt |
279 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
51043911 |
aaagtttcacatgaagagagagctgttttttttattttgttacatcaactagacaacaaaggagatgtt |
51043843 |
T |
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