View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12906_high_6 (Length: 262)
Name: NF12906_high_6
Description: NF12906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12906_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 46430048 - 46429799
Alignment:
| Q |
4 |
acttgtgacattggcatacaggtacagaagagactccgctattcgtttacatgtgatcctgagaatgagaannnnnnn-------gtgcaaaataacttg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
46430048 |
acttgtgacattggcatacaggtacagaagagactccgctattcgtttacatgtgatcctgagaatgagaatgagaatattttttgtgcaaaataacttg |
46429949 |
T |
|
| Q |
97 |
tagatgagaattttcctcagttgattgtttggtctaaggaaaatgagaaaaacaagcatatgaagtttatgaacagttgaaggtaataataagttgttta |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46429948 |
tagatgagaattttcctcagttgattgtttggtctaaggaaaatgagaaaaacaagcatatgaagtttatgaacagttgaaggtaataataagttgttta |
46429849 |
T |
|
| Q |
197 |
gtgtcatcttcttaatgttcaatcagagttccattgtaatttgtttgatc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46429848 |
gtgtcatcttcttaatgttcaatcagagttccattgtaatttgtttgatc |
46429799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 46434745 - 46434651
Alignment:
| Q |
113 |
tcagttgattgtttggtctaaggaaaatgagaaaaacaagcatatgaagtttatgaacagttgaaggtaataataagttgtttagtgtcatcttcttaat |
212 |
Q |
| |
|
||||||||||| || ||| | | ||||| |||||||||||||||| ||||| |||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
46434745 |
tcagttgattgctttgtcgaggaaaaataagaaaaacaagcatat------tatga-cagttgaaggtactaataagtagtttagtgt-atcttcttaat |
46434654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University