View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12906_high_8 (Length: 240)
Name: NF12906_high_8
Description: NF12906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12906_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 46430090 - 46430337
Alignment:
| Q |
1 |
tgtgctggacagtcttgagagaacaatgccatgggaaatcaaccttgatactaattgttgaattgtaaggaagaatccaaatggnnnnnnnnnnnnncaa |
100 |
Q |
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| T |
46430090 |
tgtgctggacagtcttgagagaacaatgccatgggaaatcaaccttgatactaattgttgaattgtaaggaagaatccaaatggaaaaataaaaaaacaa |
46430189 |
T |
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| Q |
101 |
attccagtaataaaattagcatagtatgttaatgcaaaagtttatgtattgagcttgctgaaggggaacaagtt--------------ttagttccacat |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46430190 |
attccagtaataaaattagcatagtatgttaatgcaaaagtttatgtattgagcttgctgaaggggaacaagttttagttagcatcaattagttccacat |
46430289 |
T |
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| Q |
187 |
cgcctagtttatgacacaaacaacactttataaaccccttacacaggt |
234 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
46430290 |
cgcctagtttatgacacaaacaacactttatatacctcttacacaggt |
46430337 |
T |
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