View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12906_low_1 (Length: 658)

Name: NF12906_low_1
Description: NF12906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12906_low_1
NF12906_low_1
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-640)||(226547-227187)
[»] chr4 (25 HSPs)
chr4 (1-640)||(14590191-14590831)
chr4 (1-42)||(16911515-16911556)
chr4 (1-40)||(18969696-18969735)
chr4 (1-38)||(5648216-5648253)
chr4 (1-38)||(6430766-6430803)
chr4 (1-38)||(10660361-10660398)
chr4 (1-38)||(10874506-10874543)
chr4 (1-38)||(20224941-20224978)
chr4 (1-38)||(23501750-23501787)
chr4 (1-38)||(48598964-48599001)
chr4 (1-35)||(21646924-21646958)
chr4 (1-38)||(5306804-5306841)
chr4 (1-38)||(5313135-5313172)
chr4 (1-38)||(11054287-11054324)
chr4 (1-38)||(13256538-13256575)
chr4 (1-34)||(16408744-16408777)
chr4 (1-38)||(17315439-17315476)
chr4 (1-38)||(20405050-20405087)
chr4 (5-38)||(30639337-30639370)
chr4 (1-38)||(47528669-47528706)
chr4 (1-38)||(55766607-55766644)
chr4 (1-38)||(55830862-55830899)
chr4 (4-36)||(30352735-30352767)
chr4 (3-41)||(14983788-14983826)
chr4 (2-38)||(37494808-37494844)
[»] scaffold0018 (2 HSPs)
scaffold0018 (460-562)||(187849-187951)
scaffold0018 (1-33)||(73002-73034)
[»] chr5 (16 HSPs)
chr5 (1-40)||(43334157-43334196)
chr5 (1-39)||(4619247-4619285)
chr5 (1-38)||(1565388-1565425)
chr5 (1-38)||(24448847-24448884)
chr5 (1-38)||(35710270-35710307)
chr5 (1-38)||(38879538-38879575)
chr5 (1-38)||(41014276-41014313)
chr5 (3-38)||(19438706-19438741)
chr5 (1-35)||(8170123-8170157)
chr5 (1-38)||(2838735-2838772)
chr5 (1-38)||(37024695-37024732)
chr5 (1-36)||(31299591-31299626)
chr5 (3-38)||(41956889-41956924)
chr5 (1-39)||(22861807-22861845)
chr5 (1-39)||(27328708-27328746)
chr5 (1-38)||(23974738-23974774)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-38)||(30536-30573)
[»] scaffold0057 (1 HSPs)
scaffold0057 (1-38)||(24908-24945)
[»] chr8 (24 HSPs)
chr8 (1-38)||(7136670-7136707)
chr8 (1-38)||(12670389-12670426)
chr8 (1-38)||(30454236-30454273)
chr8 (1-38)||(35261636-35261673)
chr8 (2-38)||(39461138-39461174)
chr8 (1-35)||(20869637-20869671)
chr8 (1-38)||(2626476-2626513)
chr8 (1-38)||(13160659-13160696)
chr8 (1-38)||(17823533-17823570)
chr8 (1-38)||(23286434-23286471)
chr8 (1-38)||(24245408-24245445)
chr8 (1-38)||(28817767-28817804)
chr8 (1-38)||(36720753-36720790)
chr8 (1-38)||(40605046-40605083)
chr8 (1-38)||(44530106-44530143)
chr8 (1-37)||(25250480-25250516)
chr8 (1-32)||(28407379-28407410)
chr8 (4-38)||(42840866-42840900)
chr8 (5-38)||(29521830-29521863)
chr8 (1-38)||(45071222-45071259)
chr8 (3-31)||(5688801-5688829)
chr8 (3-31)||(6760786-6760814)
chr8 (1-37)||(20284214-20284250)
chr8 (1-37)||(21070843-21070879)
[»] chr7 (30 HSPs)
chr7 (1-38)||(2541161-2541198)
chr7 (1-38)||(18326991-18327028)
chr7 (1-38)||(21172148-21172185)
chr7 (1-38)||(32758218-32758255)
chr7 (1-38)||(42798626-42798663)
chr7 (1-38)||(46354151-46354188)
chr7 (1-38)||(47077994-47078031)
chr7 (1-38)||(48735262-48735299)
chr7 (1-37)||(14732963-14732999)
chr7 (1-40)||(29140501-29140540)
chr7 (3-38)||(42495978-42496013)
chr7 (1-35)||(35334955-35334989)
chr7 (1-38)||(5180298-5180335)
chr7 (1-38)||(22699111-22699148)
chr7 (1-38)||(34626348-34626385)
chr7 (1-38)||(42805481-42805518)
chr7 (1-38)||(43557429-43557466)
chr7 (3-38)||(25198679-25198714)
chr7 (3-33)||(27629596-27629626)
chr7 (1-35)||(40463837-40463871)
chr7 (1-38)||(2663072-2663109)
chr7 (1-38)||(7193042-7193079)
chr7 (1-38)||(8149087-8149124)
chr7 (1-34)||(10693212-10693245)
chr7 (1-34)||(11617729-11617762)
chr7 (1-38)||(12473261-12473298)
chr7 (1-30)||(19427030-19427059)
chr7 (1-38)||(21447547-21447584)
chr7 (1-38)||(42476830-42476867)
chr7 (5-41)||(35787383-35787419)
[»] chr6 (11 HSPs)
chr6 (1-38)||(1346921-1346958)
chr6 (1-38)||(1354896-1354933)
chr6 (1-38)||(3815218-3815255)
chr6 (1-38)||(8409200-8409237)
chr6 (1-37)||(24734591-24734627)
chr6 (3-38)||(1941812-1941847)
chr6 (3-38)||(33922971-33923006)
chr6 (1-31)||(12222058-12222088)
chr6 (1-35)||(14975221-14975255)
chr6 (1-38)||(15866178-15866215)
chr6 (1-37)||(20400625-20400661)
[»] chr3 (23 HSPs)
chr3 (1-38)||(7697026-7697063)
chr3 (1-38)||(8247830-8247867)
chr3 (1-38)||(10870092-10870129)
chr3 (1-38)||(13730745-13730782)
chr3 (1-38)||(16735420-16735457)
chr3 (1-38)||(40272953-40272990)
chr3 (1-38)||(46421178-46421215)
chr3 (1-38)||(52926351-52926388)
chr3 (1-40)||(23871416-23871455)
chr3 (1-35)||(25517314-25517348)
chr3 (1-38)||(1217069-1217106)
chr3 (1-38)||(4495805-4495842)
chr3 (1-38)||(6411962-6411999)
chr3 (1-38)||(9607182-9607219)
chr3 (1-38)||(12914176-12914213)
chr3 (1-38)||(21874999-21875036)
chr3 (1-38)||(29366863-29366900)
chr3 (2-38)||(9276253-9276289)
chr3 (9-38)||(12525389-12525418)
chr3 (1-38)||(22609746-22609782)
chr3 (1-38)||(39203495-39203532)
chr3 (1-37)||(22123056-22123092)
chr3 (2-42)||(26782341-26782381)
[»] chr2 (21 HSPs)
chr2 (1-38)||(8455457-8455494)
chr2 (1-38)||(11514393-11514430)
chr2 (1-38)||(12024059-12024096)
chr2 (1-38)||(14530275-14530312)
chr2 (1-38)||(25079859-25079896)
chr2 (1-38)||(39189562-39189599)
chr2 (1-35)||(27573581-27573615)
chr2 (1-38)||(9671137-9671174)
chr2 (1-38)||(10543655-10543692)
chr2 (1-38)||(14544020-14544057)
chr2 (1-38)||(17705452-17705489)
chr2 (1-38)||(17896216-17896253)
chr2 (1-38)||(21779400-21779437)
chr2 (1-38)||(22371014-22371051)
chr2 (1-38)||(23397723-23397760)
chr2 (1-38)||(25249878-25249915)
chr2 (1-36)||(27466271-27466306)
chr2 (1-38)||(7214491-7214528)
chr2 (1-38)||(19977855-19977892)
chr2 (1-38)||(24200766-24200803)
chr2 (1-38)||(26684763-26684800)
[»] chr1 (26 HSPs)
chr1 (1-38)||(10668200-10668237)
chr1 (1-38)||(18944623-18944660)
chr1 (1-38)||(22930208-22930245)
chr1 (1-38)||(34714603-34714640)
chr1 (1-38)||(34725237-34725274)
chr1 (1-38)||(40424722-40424759)
chr1 (1-36)||(18742102-18742137)
chr1 (3-38)||(32632699-32632734)
chr1 (1-36)||(45402077-45402112)
chr1 (1-39)||(25290142-25290180)
chr1 (1-35)||(30395869-30395903)
chr1 (1-38)||(14617018-14617055)
chr1 (1-38)||(19932893-19932930)
chr1 (1-38)||(20004233-20004270)
chr1 (1-42)||(23768461-23768502)
chr1 (1-38)||(45812676-45812713)
chr1 (1-38)||(46248094-46248131)
chr1 (1-38)||(46991784-46991821)
chr1 (1-38)||(47214491-47214528)
chr1 (1-35)||(12126976-12127010)
chr1 (1-38)||(8197023-8197060)
chr1 (1-38)||(10163739-10163776)
chr1 (1-38)||(21723644-21723681)
chr1 (1-38)||(27474261-27474298)
chr1 (1-38)||(38478421-38478458)
chr1 (1-38)||(41319947-41319984)
[»] scaffold0187 (4 HSPs)
scaffold0187 (1-40)||(10189-10228)
scaffold0187 (1-40)||(20517-20556)
scaffold0187 (1-38)||(8902-8939)
scaffold0187 (1-38)||(19230-19267)
[»] scaffold0258 (1 HSPs)
scaffold0258 (1-38)||(13164-13201)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-38)||(83832-83869)


Alignment Details
Target: scaffold0005 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Original strand, 226547 - 227187
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc-ctcagccttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaacag 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  226547 acatgacaacaactttaccagttgcgccaaggttaccactcaggcttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaaaag 226646  T
Q  100 aaacacaacctgcaatttaggtattatctcttccatttctcgctgagttttgttccgaaaatccggtccctctattgctaatccatcggtcaagataccg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  226647 aaacacaacctgcaatttaggtattatctcttccatttctcgctgagttttgttccgaaaatccggtccctctattgccaatccatcggtcaagataccg 226746  T
Q  200 cattctctagctatagctttagcggtgtttatattatcaccggtcaccattctagcagtaattccagcatccaaacaagtcttaacagcttctttaactc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  226747 cattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttctttaactc 226846  T
Q  300 caggcctcactggattcttgatcccaataatagcaattaaagtatattcatcctctggaatgctgttaccatcttcagaagacgcttcaatatccttgaa 399  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  226847 caggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctccggaatgctgttgccatcttcagaagacgcttcaatatccttgaa 226946  T
Q  400 ggctacgcagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcattcaaatcaacaactttaccttct 499  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  226947 ggctacacagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcgttcaaatcaacaactttaccttct 227046  T
Q  500 gagttaacaactttgtcacacattttcaccactatttctgatgctcctttgcaaaatgctctagttttgtttttgttatccggaagagaaacaagaacag 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  227047 gagttaacaactttgtcacacattttcaccactatttctgatgctcctttgcagaatgctctagttttgttattgttatccggaagagaaacaagaacag 227146  T
Q  600 acatctttttacgcgttgaattgaaaggttcaaccttaact 640  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  227147 acatctttttacgcgttgaattgaaaggttcaaccttaact 227187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 14590831 - 14590191
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc-ctcagccttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaacag 99  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14590831 acatgacaacaactttaccagttgcgccaaggttaccactcaggcttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaaaag 14590732  T
Q  100 aaacacaacctgcaatttaggtattatctcttccatttctcgctgagttttgttccgaaaatccggtccctctattgctaatccatcggtcaagataccg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14590731 aaacacaacctgcaatttaggtattatctcttccatttctcgctgagttttgttccgaaaatccggtccctctattgccaatccatcggtcaagataccg 14590632  T
Q  200 cattctctagctatagctttagcggtgtttatattatcaccggtcaccattctagcagtaattccagcatccaaacaagtcttaacagcttctttaactc 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  14590631 cattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttctttaactc 14590532  T
Q  300 caggcctcactggattcttgatcccaataatagcaattaaagtatattcatcctctggaatgctgttaccatcttcagaagacgcttcaatatccttgaa 399  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  14590531 caggcctcactggatccttgatcccaataatagcaattaaagtatattcatcctccggaatgctgttgccatcttcagaagacgcttcaatatccttgaa 14590432  T
Q  400 ggctacgcagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcattcaaatcaacaactttaccttct 499  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14590431 ggctacacagagtgttctcagtgcatcggaagcaaaaccattgattacttcattgatgctatttctttgttgttcgttcaaatcaacaactttaccttct 14590332  T
Q  500 gagttaacaactttgtcacacattttcaccactatttctgatgctcctttgcaaaatgctctagttttgtttttgttatccggaagagaaacaagaacag 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  14590331 gagttaacaactttgtcacacattttcaccactatttctgatgctcctttgcagaatgctctagttttgttattgttatccggaagagaaacaagaacag 14590232  T
Q  600 acatctttttacgcgttgaattgaaaggttcaaccttaact 640  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14590231 acatctttttacgcgttgaattgaaaggttcaaccttaact 14590191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16911556 - 16911515
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctcag 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16911556 acatgacaacaactttaccagttgcgccaaggttaccctcag 16911515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18969735 - 18969696
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18969735 acatgacaacaactttaccagttgcgccaaggttaccctc 18969696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5648253 - 5648216
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5648253 acatgacaacaactttaccagttgcgccaaggttaccc 5648216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6430766 - 6430803
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6430766 acatgacaacaactttaccagttgcgccaaggttaccc 6430803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10660398 - 10660361
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10660398 acatgacaacaactttaccagttgcgccaaggttaccc 10660361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10874543 - 10874506
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10874543 acatgacaacaactttaccagttgcgccaaggttaccc 10874506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20224978 - 20224941
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20224978 acatgacaacaactttaccagttgcgccaaggttaccc 20224941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23501787 - 23501750
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23501787 acatgacaacaactttaccagttgcgccaaggttaccc 23501750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48598964 - 48599001
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48598964 acatgacaacaactttaccagttgcgccaaggttaccc 48599001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 21646958 - 21646924
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21646958 acatgacaacaactttaccagttgcgccaaggtta 21646924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5306804 - 5306841
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5306804 acatgacatcaactttaccagttgcgccaaggttaccc 5306841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5313135 - 5313172
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  5313135 acatgacaacaactttaccagttacgccaaggttaccc 5313172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11054287 - 11054324
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11054287 acatgacaacaactttaccagttgcgccaaagttaccc 11054324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13256538 - 13256575
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13256538 acatgacaacaactttaccagttgcaccaaggttaccc 13256575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 16408744 - 16408777
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  16408744 acatgacaacaactttaccagttgcgccaaggtt 16408777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17315439 - 17315476
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  17315439 acatgacaacaactttaccggttgcgccaaggttaccc 17315476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20405087 - 20405050
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  20405087 acatgacaacaactttaccagttgcgtcaaggttaccc 20405050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 30639370 - 30639337
Alignment:
Q  5 gacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||    
T  30639370 gacaacaactttaccagttgcgccaaggttaccc 30639337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47528669 - 47528706
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  47528669 acatgacaacaactttaccagttgcaccaaggttaccc 47528706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 55766607 - 55766644
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  55766607 acatgacaacaactttaccagttgcgtcaaggttaccc 55766644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 55830862 - 55830899
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  55830862 acatgacaacaactttaccagttgcgtcaaggttaccc 55830899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 30352735 - 30352767
Alignment:
Q  4 tgacaacaactttaccagttgcgccaaggttac 36  Q
    |||||||||||||||||||||||||||||||||    
T  30352735 tgacaacaactttaccagttgcgccaaggttac 30352767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 14983826 - 14983788
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccctca 41  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  14983826 atgacaacaactttaccagttctgccaaggttaccctca 14983788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 37494844 - 37494808
Alignment:
Q  2 catgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  37494844 catggcaacaactttaccagttgcaccaaggttaccc 37494808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 460 - 562
Target Start/End: Complemental strand, 187951 - 187849
Alignment:
Q  460 atttctttgttgttcattcaaatcaacaactttaccttctgagttaacaactttgtcacacattttcaccactatttctgatgctcctttgcaaaatgct 559  Q
    |||||||||||||||||| ||||| |||||||| |||| ||  ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||| ||    
T  187951 atttctttgttgttcattaaaatcgacaactttgccttatgcattaacaactttctcacacattttaaccactatttcagatgctcctttacaaaatact 187852  T
Q  560 cta 562  Q
    |||    
T  187851 cta 187849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 73002 - 73034
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggt 33  Q
    |||||||||||||||||||||||||||||||||    
T  73002 acatgacaacaactttaccagttgcgccaaggt 73034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43334196 - 43334157
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctc 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43334196 acatgacaacaactttaccagttgcgccaaggttaccctc 43334157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 4619247 - 4619285
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccct 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4619247 acatgacaacaactttaccagttgcgccaaggttaccct 4619285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1565425 - 1565388
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1565425 acatgacaacaactttaccagttgcgccaaggttaccc 1565388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24448884 - 24448847
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24448884 acatgacaacaactttaccagttgcgccaaggttaccc 24448847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35710307 - 35710270
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35710307 acatgacaacaactttaccagttgcgccaaggttaccc 35710270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38879575 - 38879538
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38879575 acatgacaacaactttaccagttgcgccaaggttaccc 38879538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41014313 - 41014276
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41014313 acatgacaacaactttaccagttgcgccaaggttaccc 41014276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 19438741 - 19438706
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  19438741 atgacaacaactttaccagttgcgccaaggttaccc 19438706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 8170123 - 8170157
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  8170123 acatgacaacaactttaccagttgcgccaaggtta 8170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2838772 - 2838735
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  2838772 acatgacaacaactttaccggttgcgccaaggttaccc 2838735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 37024695 - 37024732
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  37024695 acatgacaacaactttaccagttgcaccaaggttaccc 37024732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31299626 - 31299591
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttac 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31299626 acatgacaacaactttaccagttgcaccaaggttac 31299591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 41956924 - 41956889
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||||| |||||||    
T  41956924 atgacaacaactttaccagttgcgccaatgttaccc 41956889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22861807 - 22861845
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccct 39  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  22861807 acatgacaacaactttatcagttgtgccaaggttaccct 22861845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27328746 - 27328708
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccct 39  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  27328746 acatgacaacaactttaccaattgcgtcaaggttaccct 27328708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23974774 - 23974738
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  23974774 acatgacaacaactttacc-gttgcgccaaggttaccc 23974738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30573 - 30536
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30573 acatgacaacaactttaccagttgcgccaaggttaccc 30536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24908 - 24945
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24908 acatgacaacaactttaccagttgcgccaaggttaccc 24945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7136670 - 7136707
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7136670 acatgacaacaactttaccagttgcgccaaggttaccc 7136707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12670389 - 12670426
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12670389 acatgacaacaactttaccagttgcgccaaggttaccc 12670426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30454236 - 30454273
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30454236 acatgacaacaactttaccagttgcgccaaggttaccc 30454273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35261673 - 35261636
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35261673 acatgacaacaactttaccagttgcgccaaggttaccc 35261636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 39461138 - 39461174
Alignment:
Q  2 catgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||||||||||||||    
T  39461138 catgacaacaactttaccagttgcgccaaggttaccc 39461174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 20869637 - 20869671
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  20869637 acatgacaacaactttaccagttgcgccaaggtta 20869671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2626513 - 2626476
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  2626513 acatgacaacaactttaccaattgcgccaaggttaccc 2626476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13160696 - 13160659
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  13160696 acatgacaacaactttaccagttgcgccgaggttaccc 13160659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17823570 - 17823533
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  17823570 acatgacaacaactttaccagttgcgccaagattaccc 17823533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23286434 - 23286471
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  23286434 acatgacaacaactttaccagttgcgacaaggttaccc 23286471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24245445 - 24245408
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24245445 acatgacaacaactttaccagttgccccaaggttaccc 24245408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28817767 - 28817804
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  28817767 acatgacaacaactttaccagttgcaccaaggttaccc 28817804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 36720790 - 36720753
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  36720790 acatgacaacaactttaccagttacgccaaggttaccc 36720753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40605046 - 40605083
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  40605046 acatgacaacaactttaccagttgcgccaaagttaccc 40605083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44530143 - 44530106
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  44530143 acatgacagcaactttaccagttgcgccaaggttaccc 44530106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25250516 - 25250480
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  25250516 acatgacaacaactttaccagttgtgccaaggttacc 25250480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 28407410 - 28407379
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaagg 32  Q
    ||||||||||||||||||||||||||||||||    
T  28407410 acatgacaacaactttaccagttgcgccaagg 28407379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 42840900 - 42840866
Alignment:
Q  4 tgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||| |||||||||||||||||||    
T  42840900 tgacaacaactttactagttgcgccaaggttaccc 42840866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 29521830 - 29521863
Alignment:
Q  5 gacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||| ||||||||||||||||||||    
T  29521830 gacaacaactttatcagttgcgccaaggttaccc 29521863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45071259 - 45071222
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  45071259 acatgacaacaactttaccagtatcgccaaggttaccc 45071222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 5688829 - 5688801
Alignment:
Q  3 atgacaacaactttaccagttgcgccaag 31  Q
    |||||||||||||||||||||||||||||    
T  5688829 atgacaacaactttaccagttgcgccaag 5688801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 6760814 - 6760786
Alignment:
Q  3 atgacaacaactttaccagttgcgccaag 31  Q
    |||||||||||||||||||||||||||||    
T  6760814 atgacaacaactttaccagttgcgccaag 6760786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20284214 - 20284250
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc 37  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  20284214 acatgacaacaactttacccgttgcgtcaaggttacc 20284250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21070843 - 21070879
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc 37  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  21070843 acatgacaacaactttacccgttgcgtcaaggttacc 21070879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2541161 - 2541198
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2541161 acatgacaacaactttaccagttgcgccaaggttaccc 2541198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18327028 - 18326991
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18327028 acatgacaacaactttaccagttgcgccaaggttaccc 18326991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21172148 - 21172185
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21172148 acatgacaacaactttaccagttgcgccaaggttaccc 21172185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32758255 - 32758218
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32758255 acatgacaacaactttaccagttgcgccaaggttaccc 32758218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42798663 - 42798626
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42798663 acatgacaacaactttaccagttgcgccaaggttaccc 42798626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46354188 - 46354151
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46354188 acatgacaacaactttaccagttgcgccaaggttaccc 46354151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47077994 - 47078031
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47077994 acatgacaacaactttaccagttgcgccaaggttaccc 47078031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48735262 - 48735299
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48735262 acatgacaacaactttaccagttgcgccaaggttaccc 48735299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14732963 - 14732999
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  14732963 acatgacaacaactttaccagttgcgccaaggttacc 14732999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29140501 - 29140540
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctc 40  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  29140501 acatgacaacaactttaccagttgcgccaagattaccctc 29140540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 42495978 - 42496013
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  42495978 atgacaacaactttaccagttgcgccaaggttaccc 42496013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 35334955 - 35334989
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  35334955 acatgacaacaactttaccagttgcgccaaggtta 35334989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5180298 - 5180335
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  5180298 acatgacaacaactttaccagttgcgtcaaggttaccc 5180335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22699111 - 22699148
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  22699111 acatgacaacaactttaccagttgcgtcaaggttaccc 22699148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34626348 - 34626385
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  34626348 acatgacaacaactttaccagttgcgctaaggttaccc 34626385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42805518 - 42805481
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42805518 acatgacaacaactttaccagttacgccaaggttaccc 42805481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43557466 - 43557429
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  43557466 acatgacaacaactttaccagttgcggcaaggttaccc 43557429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 25198714 - 25198679
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||| ||||||||||||||    
T  25198714 atgacaacaactttaccagttacgccaaggttaccc 25198679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 27629626 - 27629596
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggt 33  Q
    |||||||||||||||||||||||||||||||    
T  27629626 atgacaacaactttaccagttgcgccaaggt 27629596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 40463871 - 40463837
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  40463871 acatgacaacaactttaccggttgcgccaaggtta 40463837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2663072 - 2663109
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  2663072 acataacaacaactttactagttgcgccaaggttaccc 2663109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7193079 - 7193042
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  7193079 acatgacaacaactttacaagttacgccaaggttaccc 7193042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8149087 - 8149124
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  8149087 acatgacaacaacattaccagttgtgccaaggttaccc 8149124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10693212 - 10693245
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtt 34  Q
    |||||||||||||||||| |||||||||||||||    
T  10693212 acatgacaacaactttactagttgcgccaaggtt 10693245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11617729 - 11617762
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtt 34  Q
    |||||||||||||||||||||||||||| |||||    
T  11617729 acatgacaacaactttaccagttgcgccgaggtt 11617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12473298 - 12473261
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  12473298 acatgacaacaactttaccggttgcgccaaggctaccc 12473261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 19427030 - 19427059
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaa 30  Q
    ||||||||||||||||||||||||||||||    
T  19427030 acatgacaacaactttaccagttgcgccaa 19427059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21447584 - 21447547
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  21447584 acatgacaacaaatttatcagttgcgccaaggttaccc 21447547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42476867 - 42476830
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  42476867 acatgacaacaactttaccagttacgccaatgttaccc 42476830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 35787383 - 35787419
Alignment:
Q  5 gacaacaactttaccagttgcgccaaggttaccctca 41  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  35787383 gacaacaactttaccggttgcaccaaggttaccctca 35787419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1346958 - 1346921
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1346958 acatgacaacaactttaccagttgcgccaaggttaccc 1346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1354896 - 1354933
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1354896 acatgacaacaactttaccagttgcgccaaggttaccc 1354933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3815218 - 3815255
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3815218 acatgacaacaactttaccagttgcgccaaggttaccc 3815255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8409237 - 8409200
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  8409237 acattacaacaactttaccagttgcgccaaggttaccc 8409200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24734627 - 24734591
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  24734627 acatgacaacaactttaccagttgcgccaatgttacc 24734591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 1941847 - 1941812
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1941847 atgacaacaactttaccagttgcaccaaggttaccc 1941812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 33922971 - 33923006
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33922971 atgacaacaactttaccggttgcgccaaggttaccc 33923006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 12222058 - 12222088
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaag 31  Q
    |||||||||||||||||||||||||||||||    
T  12222058 acatgacaacaactttaccagttgcgccaag 12222088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14975221 - 14975255
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    ||||||||||||||||||| |||||||||||||||    
T  14975221 acatgacaacaactttaccggttgcgccaaggtta 14975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15866178 - 15866215
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  15866178 acatgccaacaactttaccagttgggccaaggttaccc 15866215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20400661 - 20400625
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc 37  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  20400661 acatgacaacaactataccaattgcgccaaggttacc 20400625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7697026 - 7697063
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7697026 acatgacaacaactttaccagttgcgccaaggttaccc 7697063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8247830 - 8247867
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8247830 acatgacaacaactttaccagttgcgccaaggttaccc 8247867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10870092 - 10870129
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10870092 acatgacaacaactttaccagttgcgccaaggttaccc 10870129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13730745 - 13730782
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13730745 acatgacaacaactttaccagttgcgccaaggttaccc 13730782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16735457 - 16735420
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  16735457 acatgacaacaactttaccagttgcgccaaggttaccc 16735420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40272953 - 40272990
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40272953 acatgacaacaactttaccagttgcgccaaggttaccc 40272990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46421178 - 46421215
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46421178 acatgacaacaactttaccagttgcgccaaggttaccc 46421215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52926351 - 52926388
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  52926351 acatgacaacaactttaccagttgcgccaaggttaccc 52926388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23871455 - 23871416
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctc 40  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  23871455 acatgacaacaactttactagttgcgccaaggttaccctc 23871416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 25517314 - 25517348
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  25517314 acatgacaacaactttaccagttgcgccaaggtta 25517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 1217106 - 1217069
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  1217106 acatgactacaactttaccagttgcgccaaggttaccc 1217069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4495805 - 4495842
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  4495805 acatgacaacaactttaccagttgcgcgaaggttaccc 4495842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6411962 - 6411999
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6411962 acatgacaacaactttaccagttgcgtcaaggttaccc 6411999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9607219 - 9607182
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  9607219 acatgacaacaactttacaagttgcgccaaggttaccc 9607182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12914176 - 12914213
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||| |||||||||||||||||||||||||||||||||    
T  12914176 acattacaacaactttaccagttgcgccaaggttaccc 12914213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21875036 - 21874999
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  21875036 acatgacaacaactttaccagttgcgtcaaggttaccc 21874999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29366863 - 29366900
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  29366863 acatgacaacaactttaccagttacgccaaggttaccc 29366900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 9276289 - 9276253
Alignment:
Q  2 catgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||| |||||||||||||||||||    
T  9276289 catgacaacaactttactagttgcgccaaggttaccc 9276253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 38
Target Start/End: Complemental strand, 12525418 - 12525389
Alignment:
Q  9 acaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||    
T  12525418 acaactttaccagttgcgccaaggttaccc 12525389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22609782 - 22609746
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22609782 acatgacaacaactttacc-gttgcgccaaggttaccc 22609746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39203532 - 39203495
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  39203532 acatgacaacaactttacaagttgtgccaaggttaccc 39203495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22123056 - 22123092
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttacc 37  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  22123056 acatgacaacaaatttaccagtggcgccaaggttacc 22123092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 26782381 - 26782341
Alignment:
Q  2 catgacaacaactttaccagttgcgccaaggttaccctcag 42  Q
    |||||||| |||||||||| ||||| |||||||||||||||    
T  26782381 catgacaataactttaccaattgcgtcaaggttaccctcag 26782341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8455457 - 8455494
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8455457 acatgacaacaactttaccagttgcgccaaggttaccc 8455494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11514430 - 11514393
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11514430 acatgacaacaactttaccagttgcgccaaggttaccc 11514393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12024059 - 12024096
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12024059 acatgacaacaactttaccagttgcgccaaggttaccc 12024096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14530312 - 14530275
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14530312 acatgacaacaactttaccagttgcgccaaggttaccc 14530275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25079859 - 25079896
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25079859 acatgacaacaactttaccagttgcgccaaggttaccc 25079896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39189562 - 39189599
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39189562 acatgacaacaactttaccagttgcgccaaggttaccc 39189599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 27573615 - 27573581
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  27573615 acatgacaacaactttaccagttgcgccaaggtta 27573581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9671174 - 9671137
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  9671174 acatgacaacaactttaccggttgcgccaaggttaccc 9671137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10543692 - 10543655
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  10543692 acatgacaacaactttatcagttgcgccaaggttaccc 10543655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14544057 - 14544020
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14544057 acatgacaacaactttaccaattgcgccaaggttaccc 14544020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17705489 - 17705452
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17705489 acatgacaacaactttaccagttgcaccaaggttaccc 17705452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 17896253 - 17896216
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||| |||||||||||    
T  17896253 acatgacaacaactttaccagttgcgtcaaggttaccc 17896216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21779400 - 21779437
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  21779400 acatgacaacaacttcaccagttgcgccaaggttaccc 21779437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22371051 - 22371014
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22371051 acatgacaacaactttaccagttgggccaaggttaccc 22371014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23397760 - 23397723
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  23397760 acatgacaacaactttaccagttgcaccaaggttaccc 23397723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25249878 - 25249915
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25249878 acatgacaacaactttaccaattgcgccaaggttaccc 25249915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27466271 - 27466306
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttac 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  27466271 acatgacaacaactttaccagttgcgccaatgttac 27466306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7214528 - 7214491
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  7214528 acatgacaacaactttaccagttgtgccaaagttaccc 7214491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19977855 - 19977892
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  19977855 acatgacaacaacttcaccagttccgccaaggttaccc 19977892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24200766 - 24200803
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||  |||||||||||    
T  24200766 acatgacaacaactttaccagttgcatcaaggttaccc 24200803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26684763 - 26684800
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||| || |||||||    
T  26684763 acatgacaacaactttaccagttgcgctaaagttaccc 26684800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10668237 - 10668200
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10668237 acatgacaacaactttaccagttgcgccaaggttaccc 10668200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18944660 - 18944623
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18944660 acatgacaacaactttaccagttgcgccaaggttaccc 18944623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 22930208 - 22930245
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22930208 acatgacaacaactttaccagttgcgccaaggttaccc 22930245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34714640 - 34714603
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34714640 acatgacaacaactttaccagttgcgccaaggttaccc 34714603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34725237 - 34725274
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34725237 acatgacaacaactttaccagttgcgccaaggttaccc 34725274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40424759 - 40424722
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40424759 acatgacaacaactttaccagttgcgccaaggttaccc 40424722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 18742102 - 18742137
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttac 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  18742102 acatgacaacaactttaccagttgcgccaaggttac 18742137  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Original strand, 32632699 - 32632734
Alignment:
Q  3 atgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||||||    
T  32632699 atgacaacaactttaccagttgcgccaaggttaccc 32632734  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 45402112 - 45402077
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttac 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  45402112 acatgacaacaactttaccagttgcgccaaggttac 45402077  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25290180 - 25290142
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccct 39  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  25290180 acatgacaacaactttacctgttgcgccaaggttaccct 25290142  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30395869 - 30395903
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30395869 acatgacaacaactttaccagttgcgccaaggtta 30395903  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14617055 - 14617018
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  14617055 acatgacaacaactttaccggttgcgccaaggttaccc 14617018  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19932893 - 19932930
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  19932893 acatgacaacaactttaccagttgcgccaaggtaaccc 19932930  T

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Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20004233 - 20004270
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  20004233 acatgacaacaactttaccagttgcaccaaggttaccc 20004270  T

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Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23768461 - 23768502
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctcag 42  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  23768461 acatgacaacaactttaccagttgcgtcgaggttaccctcag 23768502  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45812676 - 45812713
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45812676 acatgacaacaactttatcagttgcgccaaggttaccc 45812713  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46248094 - 46248131
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  46248094 acatgacaacaactttaccagttgagccaaggttaccc 46248131  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46991821 - 46991784
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  46991821 acatgacaacaactttaccagttgcaccaaggttaccc 46991784  T

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Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 47214528 - 47214491
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||||||||| |||||||    
T  47214528 acatgacaacaactttaccagttgcgccaaagttaccc 47214491  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12126976 - 12127010
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggtta 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  12126976 acatgacaacaactttacgagttgcgccaaggtta 12127010  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8197060 - 8197023
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  8197060 acatgacaacaacttgaccagttgcaccaaggttaccc 8197023  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10163776 - 10163739
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||| |||||||||||| |||||||    
T  10163776 acatgacaacaactttatcagttgcgccaatgttaccc 10163739  T

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Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21723681 - 21723644
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  21723681 acatgacaacaactttaccagttgtgcgaaggttaccc 21723644  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27474298 - 27474261
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||| || ||||||||||    
T  27474298 acatgacaacaactttaccagttgagctaaggttaccc 27474261  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38478421 - 38478458
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  38478421 acatgacaacaagtttactagttgcgccaaggttaccc 38478458  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41319947 - 41319984
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||||||||| | |||||||||||    
T  41319947 acatgacaacaactttaccagttgtgtcaaggttaccc 41319984  T

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Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10189 - 10228
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctc 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  10189 acatgacaacaactttaccagttgcgtcaaggttaccctc 10228  T

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Target: scaffold0187; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 20517 - 20556
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccctc 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  20517 acatgacaacaactttaccagttgcgtcaaggttaccctc 20556  T

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Target: scaffold0187; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8939 - 8902
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  8939 acatgacaacaacttcaccggttgcgccaaggttaccc 8902  T

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Target: scaffold0187; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19267 - 19230
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  19267 acatgacaacaacttcaccggttgcgccaaggttaccc 19230  T

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Target: scaffold0258 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13164 - 13201
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13164 acatgacaacaactttaccggttgcgccaaggttaccc 13201  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 83869 - 83832
Alignment:
Q  1 acatgacaacaactttaccagttgcgccaaggttaccc 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  83869 acatgacaacaactttactagttgcgccaaggttaccc 83832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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