View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12907_high_3 (Length: 406)
Name: NF12907_high_3
Description: NF12907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12907_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 387
Target Start/End: Complemental strand, 27423919 - 27423538
Alignment:
| Q |
6 |
agcagcacagaacaccctattaccaacaaaagctaaggtaaaccctttttccaatacactttgtgtgtaaccccctgacaaaaaatctccataagcattc |
105 |
Q |
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| T |
27423919 |
agcaacacaaaacaccctattaccaacaaaagctaaggtaaaccctttttccaatacactttgtgtgtaaccccctgacaaaaaatctccataagcattc |
27423820 |
T |
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| Q |
106 |
atcaaaaaatttgcatcaattagaaatcctatggccattgagctgcataagaaactaatcaacaaacaaattgatgctgaaccatacttcaaaaggaaga |
205 |
Q |
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| T |
27423819 |
atcaaaaaatttgcatcaattagaaatcctatggccattgagctgcataagaaactaatcaacaaacaaattgatgctgaagcatatttcaaaaggaaga |
27423720 |
T |
|
| Q |
206 |
ttgtatctgattttgaaccaaaaaatccactactaaaaagatggcttgcattgaatgcattgttgtttagagctgctaaagccatgtttacaagaattgt |
305 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27423719 |
ttgtgtctgattttgaaccaaaaaatccactactaaaaagatggcttgcattgaatgcattgttgtttagagctgccaaagccatgtttacaagaattgt |
27423620 |
T |
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| Q |
306 |
tatagttgctgtgagtattgtggtcataagagtgttcctcatggtttgtacacatagcatagcctttttatcatcaccctgc |
387 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27423619 |
tatagttgctgtgagtattgtggtcataagtgtgttcctcatggtttgtacacatagcatagcctttttatcatcaccctgc |
27423538 |
T |
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