View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12907_low_1 (Length: 650)
Name: NF12907_low_1
Description: NF12907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12907_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 6 - 632
Target Start/End: Original strand, 33893606 - 33894232
Alignment:
| Q |
6 |
aggagcacagatgaagaatgaaggttcatcggcacattgtagcttcctggacttcacataatgccaaagagcagctattattctcgggcgagtctcgacc |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893606 |
aggatcacagatgaagaatgaaggttcatcggcacattgtagcttcctggacttcacataatgccaaagagcagctattattctcgggcgagtctcgacc |
33893705 |
T |
|
| Q |
106 |
tcaacccctaagagtctagacaatggtgctgagaccatgaacttctcaggtgaatatttcaaatctaatttgataactgcagtgaattctttgtctcctt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33893706 |
tcaacccctaagagtctagacaatggtgctgagaccatgaacttctcaggtgaatatttcaaatctaatttgataactgcagtgaattctttgtctcctt |
33893805 |
T |
|
| Q |
206 |
ttctcttaatctcaaagccatcctgttgtttaggcgaatgagcactatcccacacaataatgtgattttcaggataaaggttctgatccaagcagatagt |
305 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33893806 |
ttctcttaacctcaaagccatcctgttgtttaggcgaatgagcactatcccacacaataatgtgattttcaggataaaggttctgatccaagcatatagt |
33893905 |
T |
|
| Q |
306 |
aattttctagaaaaaatcagaaaacgttgtgtcagaaggacttgatctctgcaaaattccggacgaaagatcgttcccatcttccaatccccttccaatt |
405 |
Q |
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|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||| |
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| T |
33893906 |
aattttcttgaaaaaatcagaaaactttgtgtcagaaggacttgatctctgcaaaattccagacaaaagatcgttcccatcttccaatacccttccaatt |
33894005 |
T |
|
| Q |
406 |
atcttcaaagaccaagaagattcctcaacagttttatccttttcagagtcagtttttgtgtgcttcgagaacgtattaaacacataaactctcagagttt |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33894006 |
atcttcaaagaccaagaagattcctcaacagttttatcctcctcagagtcagtttttgtgtgcttcgagaacgtattaaacacataaactctcagagttt |
33894105 |
T |
|
| Q |
506 |
tctgaacatnnnnnnnacttctaatagcctcctgcataccaagctttctcttagccaatgccgcatccatctgagcctcaaaatcaagcaattgagtata |
605 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33894106 |
tctgaacatgggggggacttctaatagcctcctgcataccaagctttctcttagccaatgcagcatccatctgagcctcaaaatcaagcaattgagtata |
33894205 |
T |
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| Q |
606 |
aagagcagactcaggcagaatcgtagc |
632 |
Q |
| |
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| T |
33894206 |
aagagcagactcaggcagaatcgtagc |
33894232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 265
Target Start/End: Original strand, 42820660 - 42820879
Alignment:
| Q |
46 |
agcttcctggacttcacataatgccaaagagcagctattattctcgggcgagtctcgacctcaacccctaagagtctagacaatggtgctgagaccatga |
145 |
Q |
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||||||||| |||||||||| | |||||||||||| ||||| || || || || || | ||||| |||||| | | ||| ||| |||| || ||||| | |
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| T |
42820660 |
agcttcctgaacttcacatagttccaaagagcagccattatcctaggacgggtatcaaactcaatccctaaaactttagccaacggtgtcgaaaccataa |
42820759 |
T |
|
| Q |
146 |
acttctcaggtgaatatttcaaatctaatttgataactgcagtgaattctttgtctccttttctcttaatctcaaagccatcctgttgtttaggcgaatg |
245 |
Q |
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||||||| || || || |||| |||| | ||||||||||| || |||||||| ||||| ||||| | |||||| ||||| || || ||||||| | |
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| T |
42820760 |
acttctccggcgagtaattcactcctaacctaataactgcagtaaactctttgtcccctttcctcttcacctcaaaaccatcttgctgcacaggcgaacg |
42820859 |
T |
|
| Q |
246 |
agcactatcccacacaataa |
265 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
42820860 |
agcactatcccacacaataa |
42820879 |
T |
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