View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12907_low_3 (Length: 441)
Name: NF12907_low_3
Description: NF12907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12907_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 423
Target Start/End: Complemental strand, 5416432 - 5416031
Alignment:
| Q |
30 |
atttatggattagaatttgtgtatatgtaacctaa-cctgttagttattatgaatgaaataaaataaaattggaaaatctgagatcaaacaaagaatggt |
128 |
Q |
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| T |
5416432 |
atttatggattagactttgtgtatatgtaacctaaacctgttagttattatgaatgaaataaaataaaattggaaaatctgagatcaaacaaagaatggt |
5416333 |
T |
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| Q |
129 |
ttatgtttatatgtagtgaccgagtcatgaacaaggttgcttctaagaaaaggaggagaaagtttgaatga---------------catttccttcgtgg |
213 |
Q |
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| T |
5416332 |
ttatgtttatatgtagtgaccgagtcatgaa-------gcttctaagaaaaggaggagcaagtttgaatgaaattgaatgacatgacatttccttcgtgg |
5416240 |
T |
|
| Q |
214 |
aaagaagagttggtggaccatatttgttttgtataggagagtacaaaattaaagcnnnnnnncgcgggtata-----tattaaatgaaaaagattaatta |
308 |
Q |
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| T |
5416239 |
aaagaagagttggtggaccatatttgttt-gtataggagagtacaaa-ttaaagcaaaaaaacgcgggtatactatatattaaatgaaaaagatta---- |
5416146 |
T |
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| Q |
309 |
cacttacagaaacttttggaaagctgcgaaacttcgagtctattgcttcaacaaattttgaactttgatttaaggtttttatggtttctttctttagtag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5416145 |
cacttacagaaacttttggaaagctgcgaaacttcgagtctattgcttcaacaaattttgaactttgatttaaggtttttatggtttctttctttagtag |
5416046 |
T |
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| Q |
409 |
gtggagggggtaaac |
423 |
Q |
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| T |
5416045 |
gtggagggggtaaac |
5416031 |
T |
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